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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgcgctgggcggtgtgggctgcgcattagcatccgggaaagtcccgtaagcgggcgctggttggcattagcacagggcgggtgaaggcgatgaggtagtacggtgcggagcgaggcccagccccactaccatggtgcaaacatgggaagccttcacctgctcatgcagGCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCGCGCGCAACGAGGGCCCGCTGGCCTTCTATAAGGGCTTCATTCCCAACTT

Basic information

species Chlamydomonas reinhardtii
transcript EDP01675
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161819692|gb|FC110730.1|FC110730
EST:     CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGG                         GCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG
genomic: CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGGgtgagcgcgc ... gctcatgcagGCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG
EST: gi|9210083|gb|BE336998.1|BE336998
EST:     CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGG                         GCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG
genomic: CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGGgtgagcgcgc ... gctcatgcagGCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG
EST: gi|8933158|gb|BE227919.1|BE227919
EST:     CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGG                         GCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG
genomic: CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGGgtgagcgcgc ... gctcatgcagGCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG
EST: gi|161812247|gb|FC097815.1|FC097815
EST:     CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGG                         GCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG
genomic: CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGGgtgagcgcgc ... gctcatgcagGCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG
EST: gi|161810681|gb|FC096834.1|FC096834
EST:     CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGG                         GCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG
genomic: CGCGGTATGCATTGGCTCGCCCGTGGATGTGGTCAAGTCGCGCGTCATGGgtgagcgcgc ... gctcatgcagGCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcccagccccactaccatggtgcaaacatgggaagccttcacctgctcatgcagGCGACCGGGAGGGCAAGTTCAAGGGCGTACTTGACTGCTTCGTCAAGACCGCGCGCAACGAGGGCCCGCTGGCCTTCTATAAGGGCTTCATTCCCAACTT
                                          cctgctc  CT-rich tract