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gtgagtgagaggtaggccaggcaaaccagcacagtgtggacggatcgcagggtgtgtatgtgcgtttgcatgtaccgtatcatcgtcggttatttgttcactacattcaacatgccatgttagccccgtatttcatgagacggctacccccttacccccatccccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP00871 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|15369143|gb|BI528569.1|BI528569
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|49463307|gb|BP091220.1|BP091220
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|22076228|gb|BQ825004.1|BQ825004
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|6546842|gb|AV392626.1|AV392626
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|10780975|gb|AV637655.1|AV637655
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|161817937|gb|FC103632.1|FC103632
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAACGAGCAGGTCGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|10127159|gb|BE725863.1|BE725863
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|14230365|gb|BG849181.1|BG849181
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|15373362|gb|BI532788.1|BI532788
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGEST: gi|6542126|gb|AV387910.1|AV387910
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
EST: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGG GCATCGGCTACAGCGATGACAGGCTGCTGCAGACGCGCATCTTCTC-TACG
genomic: CTTCAACGAGAATGAGCAGGTGGCCTTCTGCCCCGCCATCATCGTGCCGGgtgagtgaga ... ccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACG
gttagccccgtatttcatgagacggctacccccttacccccatccccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG
cccttac putative branch site (score: 3)
ctacccccttaccccc CT-rich tract
tatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgagaggtaggccaggcaaaccagcacagtgtggacggatcgcagggtgtgtatgtgcgtttgcatgtaccgtatcatcgtcggttatttgttcactacattcaacatgccatgttagccccgtatttcatgagacggctacccccttacccccatccccgctgtcagGCATCGGCTACAGCGATGACAAGCTGCTGCAGACGCGCATCTTCTCCTACGCCGACACGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG