1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagaggcgccggaggggtgagggctcggcggggagggtgtgttttttgtcgcttcgaggcggaaccgtgcgtgctccaagcctttacggatggctggctcctggcggcttcctgctccccagcgacgtgcccaccagacccaacgctacggagtcacccctgcacccaacccgttgcgccaccttgacacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCACCATCCGCATGTACATCGAGCAGTACACGGCCGACCCCGCCAAGCTCAT
species | Chlamydomonas reinhardtii |
transcript | EDO99577 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCAEST: gi|23362713|gb|BU650533.1|BU650533
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCAEST: gi|23362950|gb|BU650770.1|BU650770
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCAEST: gi|22060981|gb|BQ814004.1|BQ814004
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: ATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTTCGTGTTCACAG ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCAEST: gi|239841383|gb|GR283240.1|GR283240
genomic: ATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTT-CGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCAEST: gi|8576432|gb|BE128973.1|BE128973
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCAEST: gi|239842247|gb|GR284104.1|GR284104
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCAEST: gi|161798352|gb|FC083522.1|FC083522
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACGG ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCA
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCA
aacgctacggagtcacccctgcacccaacccgttgcgccaccttgacacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCACCATCCGCATGTACATCGAGCAGTACACGGCCGACCCCGCCAAGCTCAT
ccttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaggcgccggaggggtgagggctcggcggggagggtgtgttttttgtcgcttcgaggcggaaccgtgcgtgctccaagcctttacggatggctggctcctggcggcttcctgctccccagcgacgtgcccaccagacccaacgctacggagtcacccctgcacccaacccgttgcgccaccttgacacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCACCATCCGCATGTACATCGAGCAGTACACGGCCGACCCCGCCAAGCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA