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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcgcagatggggagggcactgagtggggtttcgcgtggggcaggggcgtgggggcccaggaaggaggggcaaggaagaggggaggcgagacagatcggccggggcagaggtggtgttacgggtacgaagcgtggcgcggtaacattgccacctgtccgcaccctcacgcccgcagCCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGCGCACCTGCGCGACGTGATCGCCAAGTCCAAGGCCGGAGACAAGATCGGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO99576
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23362713|gb|BU650533.1|BU650533
EST:     GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAG                         CCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
genomic: GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAGgtgcgtgcgc ... acgcccgcagCCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
EST: gi|23362950|gb|BU650770.1|BU650770
EST:     GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAG                         CCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
genomic: GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAGgtgcgtgcgc ... acgcccgcagCCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
EST: gi|22060981|gb|BQ814004.1|BQ814004
EST:     GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAG                         CCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
genomic: GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAGgtgcgtgcgc ... acgcccgcagCCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
EST: gi|8576432|gb|BE128973.1|BE128973
EST:     GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAG                         CCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
genomic: GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAGgtgcgtgcgc ... acgcccgcagCCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
EST: gi|239842247|gb|GR284104.1|GR284104
EST:     GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAG                         CCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
genomic: GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAGgtgcgtgcgc ... acgcccgcagCCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC
EST: gi|161798352|gb|FC083522.1|FC083522
EST:     GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAG                         CCGCTACGACTACGAGGAGTGCGCCAGCGCCGACGCCGACNAGATGGTGGC
genomic: GCGGACGTGTGCACCGAGCACTGGAAGCAGTACGGCCGCAACTTCTTCAGgtgcgtgcgc ... acgcccgcagCCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtacgaagcgtggcgcggtaacattgccacctgtccgcaccctcacgcccgcagCCGCTACGATTACGAGGAGTGCGCCAGCGCCGATGCCGACAAGATGGTGGCGCACCTGCGCGACGTGATCGCCAAGTCCAAGGCCGGAGACAAGATCGGC
                                        ccctcac  putative branch site (score: 3)
                                        ccctcac  CT-rich tract
                   taacatt  TA-rich tract