1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctggggtactgcagggcggggcgcaggtccatttagtgacaccaatcaaatgcatccaagaactgcacataactcgctaacgccacaccaatcccacagGAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCTGACCGCACCAACTTCTACGTGTAAGCGGGCCAAGACGTTGCCTGTACGG
species | Chlamydomonas reinhardtii |
transcript | EDO98046 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGACATTGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAG GAGTATTTCAGCCGCATCCTGAAGAAGCTCEST: gi|15368961|gb|BI528387.1|BI528387
genomic: TGCTGGACATGGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAGgtgcgctgag ... aatcccacagGAGTATTTCAGCCGCATCCTGAAGAAGCTC
EST: TGCTGGACATGGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAG GAGTATTTCAGCCGCATCCTGAAGA-GCTCAAGEST: gi|23363583|gb|BU651403.1|BU651403
genomic: TGCTGGACATGGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAGgtgcgctgag ... aatcccacagGAGTATTTCAGCCGCATCCTGAAGAAGCTCAAG
EST: TGCTGGACATGGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAG GAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCTEST: gi|161817773|gb|FC100010.1|FC100010
genomic: TGCTGGACATGGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAGgtgcgctgag ... aatcccacagGAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCT
EST: TGCTGGACATGGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAG GAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCTEST: gi|10789885|gb|AV627250.1|AV627250
genomic: TGCTGGACATGGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAGgtgcgctgag ... aatcccacagGAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCT
EST: TGCTGGACATGGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAG GAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCTEST: gi|14238250|gb|BG857066.1|BG857066
genomic: TGCTGGACATGGACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAGgtgcgctgag ... aatcccacagGAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCT
EST: CCTACCTGCAG GAGTATTTCAGCCGCATCCTG-AGAAGCTCAAGAAGGTGGGCGCCTCTGCT
genomic: CCTACCTGCAGgtgcgctgag ... aatcccacagGAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCT
atcaaatgcatccaagaactgcacataactcgctaacgccacaccaatcccacagGAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCTGACCGCACCAACTTCTACGTGTAAGCGGGCCAAGACGTTGCCTGTACGG
cgctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctggggtactgcagggcggggcgcaggtccatttagtgacaccaatcaaatgcatccaagaactgcacataactcgctaacgccacaccaatcccacagGAGTATTTCAGCCGCATCCTGAAGAAGCTCAAGGAGGTGGGCGCCTCTGCTGACCGCACCAACTTCTACGTGTAAGCGGGCCAAGACGTTGCCTGTACGG
- - - - - - - - - - - - - - - - - -agtgaca
- - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -catccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgccaca