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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtcgtacgctgttgttgttgaggccgtcagttttagagcagtttctgcatatcacgctgccccgtatggtcctggcaaacgcacccaacgacctggatgcgggctgtgtcttgcctcggtgcagTTCACGGAGGCGGTGGTGAACCTGAAGTTTGATGAGGAGCCCAAGTACGAGGCGTACATGAAGCTGTTTGAGCCGCTGTGCGGCCCGGCACCGTCACGGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO97462
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161798082|gb|FC082618.1|FC082618
EST:     CTACGTCCGCGGAGATGCTCTGTCGGTACACGCCGCCGGCATTCCGCCAG                         TTCACGGAGGCGGTGGTGAACCTGAAGTTTGATGAGGAGCCCAAGTACGAG
genomic: CCACGTCCGCGGAGATGCTTTGTCGGTACACGCCGCCGGCATTCCGCCAGgtgcgtcgta ... ctcggtgcagTTCACGGAGGCGGTGGTGAACCTGAAGTTTGATGAGGAGCCCAAGTACGAG
EST: gi|8514173|gb|BE122068.1|BE122068
EST:     CCACGTCCGCGGAGATGCTTTGTCGGTACACGCCGCCGGCATTCCGCCAG                         TTCACGGAGGCGGTGGTGAACCTGAAGTTTGATG
genomic: CCACGTCCGCGGAGATGCTTTGTCGGTACACGCCGCCGGCATTCCGCCAGgtgcgtcgta ... ctcggtgcagTTCACGGAGGCGGTGGTGAACCTGAAGTTTGATG
EST: gi|161795234|gb|FC081394.1|FC081394
EST:     CCACGTCCGCGGAGATGCTCTGTCGGTACACGCCGCCGGCATTCCGCCAG                         TTCACGGAGGCGGTGGTGAACCTGAAGTTTGATGAGGAGCCCAAGTACGAG
genomic: CCACGTCCGCGGAGATGCTTTGTCGGTACACGCCGCCGGCATTCCGCCAGgtgcgtcgta ... ctcggtgcagTTCACGGAGGCGGTGGTGAACCTGAAGTTTGATGAGGAGCCCAAGTACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctggcaaacgcacccaacgacctggatgcgggctgtgtcttgcctcggtgcagTTCACGGAGGCGGTGGTGAACCTGAAGTTTGATGAGGAGCCCAAGTACGAGGCGTACATGAAGCTGTTTGAGCCGCTGTGCGGCCCGGCACCGTCACGGC
                                       tcttgcctc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtcgtacgctgttgttgttgaggccgtcagttttagagcagtttctgcatatcacgctgccccgtatggtcctggcaaacgcacccaacgacctggatgcgggctgtgtcttgcctcggtgcagTTCACGGAGGCGGTGGTGAACCTGAAGTTTGATGAGGAGCCCAAGTACGAGGCGTACATGAAGCTGTTTGAGCCGCTGTGCGGCCCGGCACCGTCACGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT