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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggctgcggcgcggcggagccagggcgtgtcacacacacgtggcctgcagctgtgttggtcaggcacagtccggcagtggagtccgcaggcgcctgcattcctggtccttgacccgccgccgccgccgcctgcctgccgccccgcagGCCTCCATCATCAGCGACCTGCTGGTGTTCAAGAACGTCAAGGCCAAGCTCGGCGGCCGCGTGCGCGTGCTGGTGTCCGGCAGCGCCCCGCTCAGCCAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO96800
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15702755|gb|BI727060.1|BI727060
EST:     CCTACAACCGCAAGGAGTACTACATGAAGATGGGGTACAAGCAGGACCAG                         GCCTTCATCATCAGCGACCTGCTGGTGTTCAAGAACGTCAAGGCCAAGCTC
genomic: CCTACAACCGCAAGGAGTACTACATGAAGATGGGGTACAAGCAGGACCAGgtgcggctgc ... cgccccgcagGCCTCCATCATCAGCGACCTGCTGGTGTTCAAGAACGTCAAGGCCAAGCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcattcctggtccttgacccgccgccgccgccgcctgcctgccgccccgcagGCCTCCATCATCAGCGACCTGCTGGTGTTCAAGAACGTCAAGGCCAAGCTCGGCGGCCGCGTGCGCGTGCTGGTGTCCGGCAGCGCCCCGCTCAGCCAGC
              ccttgac  putative branch site (score: 4)
                                            ccgcccc  putative PPT