1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cccctgctgccatgtaactcccctgcttgtatcgtgttctcaattgttataacattgcaacccccaacccgcgcgcatgtgccccgtccgccccacccagGTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTACTACACCCACACCATCCACGAGCCCGGCTACCGCTTCTCCACCTCCGGCA
species | Chlamydomonas reinhardtii |
transcript | EDO96110 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGTACGACACGCTGTCGTACACCGCCGGCGAGTGCAACTACGGCGGCAAG GTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTACEST: gi|22061099|gb|BQ814081.1|BQ814081
genomic: CGTACGACACGCTGTCGTACACCGCCGGCGAGTGCAACTACGGCGGCAAGgtgcgtgcgt ... ccccacccagGTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTAC
EST: CGTACGACACGCTGTCGTACACCGCCGGCGAGTGCAACTACGGCGGCAAG GTGACTGACTCACACGACCGATACACACTGATGACGGTTCTGGCCACCTACEST: gi|16437402|gb|BM002622.1|BM002622
genomic: CGTACGACACGCTGTCGTACACCGCCGGCGAGTGCAACTACGGCGGCAAGgtgcgtgcgt ... ccccacccagGTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTAC
EST: CGTACGACACGCTGTCGTACACCGCCGGCGAGTGCAACTACGGCGGCAAG GTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTACEST: gi|16438283|gb|BM003503.1|BM003503
genomic: CGTACGACACGCTGTCGTACACCGCCGGCGAGTGCAACTACGGCGGCAAGgtgcgtgcgt ... ccccacccagGTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTAC
EST: CGTACGACACGCTGTCGTACACCGCCGGCGAGTGCAACTACGGCGGCAAG GTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTAC
genomic: CGTACGACACGCTGTCGTACACCGCCGGCGAGTGCAACTACGGCGGCAAGgtgcgtgcgt ... ccccacccagGTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTAC
gttataacattgcaacccccaacccgcgcgcatgtgccccgtccgccccacccagGTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTACTACACCCACACCATCCACGAGCCCGGCTACCGCTTCTCCACCTCCGGCA
ttataac putative branch site (score: 2)
tccgcccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccctgctgccatgtaactcccctgcttgtatcgtgttctcaattgttataacattgcaacccccaacccgcgcgcatgtgccccgtccgccccacccagGTGACTGACTCACACGACCGACACACACTGATGACGGTTCTGGCCACCTACTACACCCACACCATCCACGAGCCCGGCTACCGCTTCTCCACCTCCGGCA
- - - - - - - -aactccc
- - - - - - - - - - - -tgcttgt
- - - - - - - - - - - - - - - -tcgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtg