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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggcactctgactgggcgggcggatgcatttccagggctgggcggcggcgcgtcatctgccgtgttgtgtggcttcacatcttgtttgtgtggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09617
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23362291|gb|BU650111.1|BU650111
EST:     CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAG                         GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
genomic: CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAGgtgagggcga ... tggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
EST: gi|161813771|gb|FC104475.1|FC104475
EST:     CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGAGCCCACCTACGAGGAG                         GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
genomic: CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAGgtgagggcga ... tggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
EST: gi|161791746|gb|FC078641.1|FC078641
EST:     CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGAGCCCACCTACGAGGAG                         GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
genomic: CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAGgtgagggcga ... tggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
EST: gi|161818190|gb|FC101896.1|FC101896
EST:     CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGAGCCCACCTACGAGGAG                         GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
genomic: CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAGgtgagggcga ... tggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
EST: gi|161792760|gb|FC080701.1|FC080701
EST:     CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGAGCCCACCTACGAGGAG                         GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
genomic: CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAGgtgagggcga ... tggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
EST: gi|16432720|gb|BI997946.1|BI997946
EST:     CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAG                         GTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
genomic: CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAGgtgagggcga ... tggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG
EST: gi|23362117|gb|BU649937.1|BU649937
EST:     CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGAGCCCACCTACGAGGAG                         GTGTGCGAGGGAACCACTGGCCACGCGGAGGTCGTGCAGGTCCTGTA
genomic: CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAGgtgagggcga ... tggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAGGTCCTGTA
EST: gi|14232374|gb|BG851190.1|BG851190
EST:     CCGAGGTGGGCTACAGAAACGGCGAGGCCAAGGACCCCACCTACGAGGAG                         GTGTGCGAGGGCACCACTGGCCACGCTGAGGTCGGGCAG
genomic: CCGAGGTGGGCTACAGCAACGGCGAGGCCAAGGACCCCACCTACGAGGAGgtgagggcga ... tggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gggcactctgactgggcgggcggatgcatttccagggctgggcggcggcgcgtcatctgccgtgttgtgtggcttcacatcttgtttgtgtggcctgcagGTGTGCGAGGGCACCACTGGCCACGCGGAGGTCGTGCAG

- - actctga
- - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcaca