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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgtggggcactggggactgggcaatgggcactgaacacgtacgcaacccaagacatccacccgattcatcgtgtaaccgtttgttcacgggctggagctcatgtcaccctcttttcattgcaacccgcccttcaccgcccccagGTGTTTATCAACCCCAGCCTGTCGGACGTGGTGGCGACCACCACCGCCGAGGCGCTGGCCATGGGCAAGTTCGTACTGTGCGCGGACCACCCCTCCAACA

Basic information

species Chlamydomonas reinhardtii
transcript EDP08851
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP08851 (Chlamydomonas reinhardtii), 3'ss of exon 8
lower sequence: GRMZM2G175453_T02 (Zea mays), 3'ss of exon 7
gtgcgtgtggggcactggggactgggcaatgggcactgaacacgtacgcaa---cccaagacatccacccgattcatcgtgtaaccgtttgttcacgggctggagctcatgtcaccct--cttttcattgcaacccgcccttcaccgcccccagGTGTTTATCAACCCCAGCCTGTCGGACGTGGTGGCGACCACCACCGCCGAGGCGCTGGCCATGGGCAAGTTCGTACTGTGCGCGGACCACCCCTCCAACA
                   |      | |     ||| | | |    ||      |  | |||||   | |  |     | |  |    ||||       ||    || ||||    |   | |   |  | |    || ||  | |   | |||| || || ||||| ||| |    |||||  |    ||| | ||||| |||||||| || ||||||||||||||  ||||||| ||||||||        
-------------------gtacaaaccagaactactcagctcagttgccgttttcttaaacatctgtctgcctgcctatatggcacggtgttatatcattg----tcttgtcgatttgattgtctgtccccatgttccgtttccagGTACAAGGTTTTCATAAACCCAAGCATCAGCGACGTCCTCTGCACCGCGACCGCGGAGGCGCTAGCGATGGGCAAGTTCGTGGTGTGCGCCGACCACCCG-------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctggagctcatgtcaccctcttttcattgcaacccgcccttcaccgcccccagGTGTTTATCAACCCCAGCCTGTCGGACGTGGTGGCGACCACCACCGCCGAGGCGCTGGCCATGGGCAAGTTCGTACTGTGCGCGGACCACCCCTCCAACA
                                      cccttcaccgccccc  CT-rich tract
                      ttttcatt  TA-rich tract