1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctcacttgtgcttccctcaaacgaagctatgttgatgtcctctgactcgcgctccgctatgtgtttccgtcgcgtccgtcgcggttgctttgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCCGCGCTACGGCCACCCAGATCCTGCAGCACGAGTGGATGCGCGAGAACGG
species | Chlamydomonas reinhardtii |
transcript | EDP04678 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGATTGCGTGCGCCGCATGCTTGTCCGCGACCCCAAGCGCCEST: gi|161814667|gb|FC100431.1|FC100431
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCC
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGATTGCGTGCGCCGCATGCTTGTCCGCGACCCCAAGCGCCEST: gi|161790532|gb|FC080015.1|FC080015
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCC
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGATTGCGTGCGCCGCATGCTTGTCCGCGACCCCAAGCGCCEST: gi|161799492|gb|FC086079.1|FC086079
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCC
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGGAT-GCGTGCGCCGCATGCTTGTCCGCGACCCCAAGCGCEST: gi|161814378|gb|FC103730.1|FC103730
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGG-ATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGC
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGATTGCGTGCGCCGCATGCTTGTCCGCGACCCCAAGCGCCEST: gi|161817487|gb|FC100855.1|FC100855
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCC
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGATTGCGTGCGCCGCATGCTTGTCCGCGACCCCAAGCGCCEST: gi|14233757|gb|BG852573.1|BG852573
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCC
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCCEST: gi|14226566|gb|BG845398.1|BG845398
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCC
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCCEST: gi|161800857|gb|FC084103.1|FC084103
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCC
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGATTGCGTGCGCCGCATGCTTGTCCGCGACCCCAAGCGCCEST: gi|161794416|gb|FC081889.1|FC081889
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCC
EST: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGG AGGCCGCCAAGGATTGCGTGCGCCGCATGCTTGTCCGCGACCCCAAGCGCC
genomic: GGTCACCAAGCCCGTGGACTTCACCAGCGACCCCTGGCCCGCCATCTCGGgtgggtgcgg ... tgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCC
ctcgcgctccgctatgtgtttccgtcgcgtccgtcgcggttgctttgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCCGCGCTACGGCCACCCAGATCCTGCAGCACGAGTGGATGCGCGAGAACGG
ctttgtccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcacttgtgcttccctcaaacgaagctatgttgatgtcctctgactcgcgctccgctatgtgtttccgtcgcgtccgtcgcggttgctttgtcccacagAGGCCGCCAAGGATTGCGTGCGTCGCATGCTTGTCCGCGACCCCAAGCGCCGCGCTACGGCCACCCAGATCCTGCAGCACGAGTGGATGCGCGAGAACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - tgtgctt
- - - - - - - - - aaacgaa
- - - - - - - - - - - - - - - -ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgtg