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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagcgcgcgagcacgcctcggcctctcctgtcctaaactgggttgggagacgtgtggggattcatttaatggtagtgaaaggggccgcctgccaccatccaacacctgaacgggccaccaccatgctgctcacccacagGACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGCCTGGCTCTGGGCTACAAGTCGTGCATCATCCCCACCATCGTGATCGGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP02266
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15696316|gb|BI720621.1|BI720621
EST:     TGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACAAGCCCGTGCAG                         GACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGC
genomic: TGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACAAGCCCGTGCAGgtcagcgcgc ... tcacccacagGACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGC
EST: gi|10787383|gb|AV644055.1|AV644055
EST:     TGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACAAGCCCGTGCAG                         GACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGC
genomic: TGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACAAGCCCGTGCAGgtcagcgcgc ... tcacccacagGACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGC
EST: gi|10790740|gb|AV628106.1|AV628106
EST:     TGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACAAGCCCGTGCAG                         GACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGC
genomic: TGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACAAGCCCGTGCAGgtcagcgcgc ... tcacccacagGACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGC
EST: gi|16432412|gb|BI997638.1|BI997638
EST:     TGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACAAGCCCGTGCAG                         GACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGC
genomic: TGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACAAGCCCGTGCAGgtcagcgcgc ... tcacccacagGACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcctgccaccatccaacacctgaacgggccaccaccatgctgctcacccacagGACGTTGCCGACGCCTGCCGCACCGGCGCCGCCACCGACATCATCTTCGGCCTGGCTCTGGGCTACAAGTCGTGCATCATCCCCACCATCGTGATCGGCG
                                          tgctcac  putative branch site (score: 2)
                                            ctcaccc  CT-rich tract