1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gtccccgcacccctgtaccgcatgtcctcgcccccacgctcctcctcacctccttgccactccttccacccacctgctcctcgtcctcctcctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAG
species | Chlamydomonas reinhardtii |
transcript | EDP02072 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC CGCGATGACGCCTEST: gi|6544442|gb|AV390226.1|AV390226
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCT
EST: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATCEST: gi|23365054|gb|BU652874.1|BU652874
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATCEST: gi|23363461|gb|BU651281.1|BU651281
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATCEST: gi|10768527|gb|AV619352.1|AV619352
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATCEST: gi|49461921|gb|BP089834.1|BP089834
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATCEST: gi|49464632|gb|BP092545.1|BP092545
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC CGCGATGACGCCTACCTGACCCEST: gi|23367839|gb|BU655657.1|BU655657
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCC
EST: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATCEST: gi|49462669|gb|BP090582.1|BP090582
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
EST: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCAC CGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
genomic: ACCTGACGGAGGACACGCAGGACTTCATCGGCCACGCCCTGGCGCTGCACgtgagcgcgg ... cctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATC
tcacctccttgccactccttccacccacctgctcctcgtcctcctcctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAG
tcctcac putative branch site (score: 2)
ccactccttccaccca putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccccgcacccctgtaccgcatgtcctcgcccccacgctcctcctcacctccttgccactccttccacccacctgctcctcgtcctcctcctcccgcagCGCGATGACGCCTACCTGACCCAGTCCGCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -cccgcac
- - - - - - - - - - - - - - - cccccac