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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtgttcggcccaatggggtggtgtgggttgcggtagtctgttgagtgcaagttgcattgggcgcacggggctggaggtgactgccgctgcatgactggcgacggggaggtagccgcactttctgtcgttcaactcgcctgccctcttgtcctgctccctgccctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTTCCCCATGCAGCCGGTGGGCCGCATGGTGCTCAACCGCAACGTGGACAAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP00871
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22076143|gb|BQ824919.1|BQ824919
EST:     CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA                         GTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
genomic: CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAAgtgagtgtgt ... ctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
EST: gi|49470113|gb|BP097974.1|BP097974
EST:     CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA                         GTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
genomic: CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAAgtgagtgtgt ... ctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
EST: gi|49463307|gb|BP091220.1|BP091220
EST:     CGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA                         GTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
genomic: CGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAAgtgagtgtgt ... ctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
EST: gi|22076228|gb|BQ825004.1|BQ825004
EST:     CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA                         GTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
genomic: CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAAgtgagtgtgt ... ctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
EST: gi|10780975|gb|AV637655.1|AV637655
EST:     CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA                         GTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
genomic: CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAAgtgagtgtgt ... ctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
EST: gi|161817937|gb|FC103632.1|FC103632
EST:     CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA                         GTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
genomic: CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAAgtgagtgtgt ... ctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
EST: gi|15373362|gb|BI532788.1|BI532788
EST:     CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA                         GTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGGGTCGCTGTT
genomic: CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAAgtgagtgtgt ... ctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
EST: gi|6542126|gb|AV387910.1|AV387910
EST:     CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA                         GTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT
genomic: CCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAAgtgagtgtgt ... ctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctgtcgttcaactcgcctgccctcttgtcctgctccctgccctactttcagGTTTGACTTTGACCCTCTGGACGTGACCAAGACCTGGCCCGAGTCGCTGTTCCCCATGCAGCCGGTGGGCCGCATGGTGCTCAACCGCAACGTGGACAAC
                   cctgccctcttgtcct  CT-rich tract