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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcacagaggacgtgaaggcttggggggacagggactaggcggaagttgcactgttacctgctgcgctcatcatatgagggtgtccaagggcgtccactcacgtaaccctgccgcctgttcagGTGCATATGCTGGACATTGAGTGCTTCACCTACCTCAACCGCGCGCTGGAGAGCTCGCTCTCGCCCATCGTCATCTTCGCCACGAACCGCGGCCTGTGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP00834
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10191266|gb|BE761342.1|BE761342
EST:     TCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTGCTGTTCATTGATGAG                         GTGCATATGCTGGACATTGAGTGCTTCACCTACCTCAACCGCGCGCTGGAG
genomic: TCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTGCTGTTCATTGATGAGgtgagcacag ... gcctgttcagGTGCATATGCTGGACATTGAGTGCTTCACCTACCTCAACCGCGCGCTGGAG
EST: gi|161804509|gb|FC088837.1|FC088837
EST:     TCGACCAGGGTGTGGCGGAGCTGGTGCCGGGTGTGCTGTTCATTGATGAG                         GTGCATATGCTGGACATTG
genomic: TCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTGCTGTTCATTGATGAGgtgagcacag ... gcctgttcagGTGCATATGCTGGACATTG
EST: gi|22058844|gb|BQ813133.1|BQ813133
EST:     TCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTGCTGTTCATTGATGAG                         GTGCATATGCTGGACATTGAGTGCTTCACCTACCTCAACCGCGCGCTGGAG
genomic: TCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTGCTGTTCATTGATGAGgtgagcacag ... gcctgttcagGTGCATATGCTGGACATTGAGTGCTTCACCTACCTCAACCGCGCGCTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcatatgagggtgtccaagggcgtccactcacgtaaccctgccgcctgttcagGTGCATATGCTGGACATTGAGTGCTTCACCTACCTCAACCGCGCGCTGGAGAGCTCGCTCTCGCCCATCGTCATCTTCGCCACGAACCGCGGCCTGTGCA
                                              cctgttc  CT-rich tract