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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccaacggcccggaccggtgagggcggctctgatgacttggtcgtcaatcgtcaccttatcctcatcgccctccctccctgccccttcaccacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCATGAAGATCAAGGTGGTGGCGCCGCCCGAGCGCAAGTACTCGGTCTGGAT

Basic information

species Chlamydomonas reinhardtii
transcript EDO98923
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10770762|gb|AV621587.1|AV621587
EST:     GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCG                         GCATTGACGACCGCATGAGCAAGGAGATCACGGACCTGGCCCCCAGCGCCA
genomic: GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCGgtgagtggga ... cacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
EST: gi|22049432|gb|BQ808798.1|BQ808798
EST:     GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCG                         GCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
genomic: GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCGgtgagtggga ... cacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
EST: gi|22064029|gb|BQ815559.1|BQ815559
EST:     GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCG                         GCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
genomic: GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCGgtgagtggga ... cacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
EST: gi|161800132|gb|FC086667.1|FC086667
EST:     GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCG                         GCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
genomic: GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCGgtgagtggga ... cacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
EST: gi|14228289|gb|BG847105.1|BG847105
EST:     GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCG                         GCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCC-AGCGCCA
genomic: GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCGgtgagtggga ... cacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
EST: gi|22049435|gb|BQ808799.1|BQ808799
EST:     GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCG                         GCATTGCCGACCGTATGAGCAAGGAGATCACGGTCCTGGCCCCCAGCGCCA
genomic: GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCGgtgagtggga ... cacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
EST: gi|22064028|gb|BQ815558.1|BQ815558
EST:     GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCG                         GCATTGCCGACCGGATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
genomic: GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCGgtgagtggga ... cacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
EST: gi|49461297|gb|BP089210.1|BP089210
EST:     GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCG                         GCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCG
genomic: GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCGgtgagtggga ... cacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCG
EST: gi|6543868|gb|AV389652.1|AV389652
EST:     GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCG                         GCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA
genomic: GGACCTCTACAACAACATCGTGCTGTCGGGAGGCACCACCATGTTCCCCGgtgagtggga ... cacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcgtcaccttatcctcatcgccctccctccctgccccttcaccacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCATGAAGATCAAGGTGGTGGCGCCGCCCGAGCGCAAGTACTCGGTCTGGAT
         ccttatcctcatcgcc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gccaacggcccggaccggtgagggcggctctgatgacttggtcgtcaatcgtcaccttatcctcatcgccctccctccctgccccttcaccacctcgcagGCATTGCCGACCGCATGAGCAAGGAGATCACGGCCCTGGCCCCCAGCGCCATGAAGATCAAGGTGGTGGCGCCGCCCGAGCGCAAGTACTCGGTCTGGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG