1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gcggcgaacgggagcgccagcgaagaaaagctatttgttactcggacacgcgtgccagaacccgcttacgcatatgctacgcaccaaccccatggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGCCGACAAG
species | Chlamydomonas reinhardtii |
transcript | EDO97448 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|6542592|gb|AV388376.1|AV388376
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: GGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|10771707|gb|AV622530.1|AV622530
genomic: GGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|6542140|gb|AV387924.1|AV387924
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|14229691|gb|BG848507.1|BG848507
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|23363367|gb|BU651187.1|BU651187
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|16072819|gb|BI874815.1|BI874815
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|14229690|gb|BG848506.1|BG848506
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|23363125|gb|BU650945.1|BU650945
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|10788685|gb|AV626405.1|AV626405
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGEST: gi|6542099|gb|AV387883.1|AV387883
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
EST: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGG GTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
genomic: CATGCTGGAGAAGACGGCCGTGCTGTTCCGCCCCAAGCTCATTGTGGCGGgtgggtgggg ... catggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCG
acacgcgtgccagaacccgcttacgcatatgctacgcaccaaccccatggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGCCGACAAG
cgcttac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcggcgaacgggagcgccagcgaagaaaagctatttgttactcggacacgcgtgccagaacccgcttacgcatatgctacgcaccaaccccatggcacagGTGCCTCCGCCTACACCCGCCACTACGACTATGCCCGCATGCGCGCCATCGCCGACAAG
- - - - - - - - - - - - - - - - -tttgtta
- - - - - - - - - - - - - - - - - - - - - - -acacgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgcacc