1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acagttgtgtgatggccgattgtcgcttggatgaccaagtatcgtaagcacacagcattgtgacatcgcgccttgtgcatgtgtgtccgcaaccacacagGATGGCAAGCCAGCCCATCCCCACGAAGGCCGGCGGCCCCGTGGTGCGGCCACAGGAGGGCAAGCCCATCAACAGCAAGTCGTCGTCTTGCTGCTAAACG
species | Chlamydomonas reinhardtii |
transcript | EDO96600 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAG GATGGCGAGCCAGCCCATCCCCACGAAGACCGGCGGCCCCGTGGTGCGGCCEST: gi|22074950|gb|BQ823726.1|BQ823726
genomic: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAGgtgcgttgct ... aaccacacagGATGGCAAGCCAGCCCATCCCCACGAAGGCCGGCGGCCCCGTGGTGCGGCC
EST: ACCAACGTCTAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAG GATGGCAAGCCAGCCCATCEST: gi|10771327|gb|AV622150.1|AV622150
genomic: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAGgtgcgttgct ... aaccacacagGATGGCAAGCCAGCCCATC
EST: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAG GATGGCAAGCCAGCCCATCCCCACGAEST: gi|22068890|gb|BQ818649.1|BQ818649
genomic: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAGgtgcgttgct ... aaccacacagGATGGCAAGCCAGCCCATCCCCACGA
EST: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAG GATGGCAAGCCAGCCCATCCCCACGAAGGCCGGCGGCCCCGTGGTGCGGCCEST: gi|22067408|gb|BQ817540.1|BQ817540
genomic: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAGgtgcgttgct ... aaccacacagGATGGCAAGCCAGCCCATCCCCACGAAGGCCGGCGGCCCCGTGGTGCGGCC
EST: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAG GATGGCAAGCCAGCCCATCCCCACGAAGGCCGGCGGCCCCGTGGTGCGGCCEST: gi|10777853|gb|AV634533.1|AV634533
genomic: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAGgtgcgttgct ... aaccacacagGATGGCAAGCCAGCCCATCCCCACGAAGGCCGGCGGCCCCGTGGTGCGGCC
EST: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAG GATGGCAAGCCAGCC
genomic: ACCAACGTCGAGCAGGCGTTCATGACCATGGCCGCTGAGATCAAGAACAGgtgcgttgct ... aaccacacagGATGGCAAGCCAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagttgtgtgatggccgattgtcgcttggatgaccaagtatcgtaagcacacagcattgtgacatcgcgccttgtgcatgtgtgtccgcaaccacacagGATGGCAAGCCAGCCCATCCCCACGAAGGCCGGCGGCCCCGTGGTGCGGCCACAGGAGGGCAAGCCCATCAACAGCAAGTCGTCGTCTTGCTGCTAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -tgtgtga
- - - - - - - - - - - - - ttggatg
- - - - - - - - - - - - - - - - - - - - - - - -gcacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt