1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgatagccggtgtgtcgtcacgtccgtggtgtggacacggcctggcctacatccccacagttgacagtgtgtatgcatctgctgtgtgttgcccgtgcagGACATGGCGATTGAGGACGGCAAGACCGGCAAGCAGCTGACCATCTGGGATATCTCCTCCATTACCGACCTCACCTCGCGCCCCATCCGCTGCGACAACC
species | Chlamydomonas reinhardtii |
transcript | EDO96585 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTGCGGTGGGATGGAAGTGGTGTACGATTGCGACTTCAACCAGCAGCTG GACATGGCGATTGAGGACGGCAAGEST: gi|23358457|gb|BU646277.1|BU646277
genomic: TGTGCGGTGGGATGGA-GTGGTGTACGATTGCGACTTCAACCAGCAGCTGgtggggcggg ... gcccgtgcagGACATGGCGATTGAGGACGGCAAG
EST: TTGCGACTTCAACCAGCAGCTG GACATGGCGATTGAGGACGGCAAGACCGGCAAGCAGCTGACCATCTGGGATEST: gi|10126760|gb|BE725464.1|BE725464
genomic: TTGCGACTTCAACCAGCAGCTGgtggggcggg ... gcccgtgcagGACATGGCGATTGAGGACGGCAAGACCGGCAAGCAGCTGACCATCTGGGAT
EST: GTGTGCGGTGGGATGGAGTGGTGTACGATTGCGACTTCAACCAGCAGCTG GACATGGCGATTGAGGACGGCAAGACCGGCAAGCAGCTGACCATCTGGGAT
genomic: GTGTGCGGTGGGATGGAGTGGTGTACGATTGCGACTTCAACCAGCAGCTGgtggggcggg ... gcccgtgcagGACATGGCGATTGAGGACGGCAAGACCGGCAAGCAGCTGACCATCTGGGAT
cctacatccccacagttgacagtgtgtatgcatctgctgtgtgttgcccgtgcagGACATGGCGATTGAGGACGGCAAGACCGGCAAGCAGCTGACCATCTGGGATATCTCCTCCATTACCGACCTCACCTCGCGCCCCATCCGCTGCGACAACC
agttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatagccggtgtgtcgtcacgtccgtggtgtggacacggcctggcctacatccccacagttgacagtgtgtatgcatctgctgtgtgttgcccgtgcagGACATGGCGATTGAGGACGGCAAGACCGGCAAGCAGCTGACCATCTGGGATATCTCCTCCATTACCGACCTCACCTCGCGCCCCATCCGCTGCGACAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - ggtgtgt
- - - - - - - - - - - - - - - - ggacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt