1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgggtcgccggggcttctgtgcgaggacgcatgtagggcggcatggtgaatgcggccagaaagcaggatgcgatagcgggatgggacgttcaaattggcgggctacgcaggcgtgcagcgccacccatgttgccaggcttacacatccctgtgcgtactcgtgtgcctattgctgcaacgttttgcagTTTGTGGAGCACATGCGGGAAAAGCGGGCTGTGGGCACTTCAACCTAAGCATCACGGCAGGCAAAATTATGCGTGCAACGGTGGACCGGAGGCTGTGTAC
species | Chlamydomonas reinhardtii |
transcript | EDP09198 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCGCCTGGCCCTACCTGCTGGACGAG TTTGTGGAGCACATGCGGGAAAAGCGGGCTGTGGGCACTTCAACCTAAGCAEST: gi|16432857|gb|BI998083.1|BI998083
genomic: AGCGCCTGGCCCTACCTGCTGGACGAGgtgggtcgcc ... cgttttgcagTTTGTGGAGCACATGCGGGAAAAGCGGGCTGTGGGCACTTCAACCTAAGCA
EST: ACTTCTCCAACTTCGACGAGAACAGCGCCTGGCCCTACCTGCTGGACGAG TTTGTGGAGCACATGCGGGAAAAGCGGGCTGTGGGCACTTCAACCTAAGCAEST: gi|22075206|gb|BQ823982.1|BQ823982
genomic: ACTTCTCCAACTTCGACGAGAACAGCGCCTGGCCCTACCTGCTGGACGAGgtgggtcgcc ... cgttttgcagTTTGTGGAGCACATGCGGGAAAAGCGGGCTGTGGGCACTTCAACCTAAGCA
EST: ACTTCTCCAACTTCGACGAGAACAGCGCCTGGCCCTACCTGCTGGACGAG TTTGTGGAGCACATGCGGGAAAAGCGGGCTGTGGGCACTTCAACCTAAGCA
genomic: ACTTCTCCAACTTCGACGAGAACAGCGCCTGGCCCTACCTGCTGGACGAGgtgggtcgcc ... cgttttgcagTTTGTGGAGCACATGCGGGAAAAGCGGGCTGTGGGCACTTCAACCTAAGCA
caggcttacacatccctgtgcgtactcgtgtgcctattgctgcaacgttttgcagTTTGTGGAGCACATGCGGGAAAAGCGGGCTGTGGGCACTTCAACCTAAGCATCACGGCAGGCAAAATTATGCGTGCAACGGTGGACCGGAGGCTGTGTAC
ggcttac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtcgccggggcttctgtgcgaggacgcatgtagggcggcatggtgaatgcggccagaaagcaggatgcgatagcgggatgggacgttcaaattggcgggctacgcaggcgtgcagcgccacccatgttgccaggcttacacatccctgtgcgtactcgtgtgcctattgctgcaacgttttgcagTTTGTGGAGCACATGCGGGAAAAGCGGGCTGTGGGCACTTCAACCTAAGCATCACGGCAGGCAAAATTATGCGTGCAACGGTGGACCGGAGGCTGTGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA