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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggggccggcggagtgaaggcgggcgggctgggcggtgcggatggcaccgggctgggtggacctgggcaggagtaccgaggtaaggcaagtcaaaagtggtgggactgggcacaaagctggtatagcttagcttgcctgcgcgcgctcacccgcttctcccttgccaacactgccgcaccgttcagGCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGTGCGAGCCCGGTATCACCAACGACGACGTGGCCAAGTACGGCGCGCTGTC

Basic information

species Chlamydomonas reinhardtii
transcript EDP08073
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22074664|gb|BQ823567.1|BQ823567
EST:     CGCTGTGGAGGAGATGGCCGGTATGGACATTCTGTGCTCGGACAAGACCG                         GCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGT
genomic: CGCTGTGGAGGAGATGGCCGGTATGGACATTCTGTGCTCGGACAAGACCGgtgagtgggg ... caccgttcagGCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGT
EST: gi|49469845|gb|BP097706.1|BP097706
EST:     GCCGGTATGGACATTCTGTGCTCGGACAAGACCG                         GCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGT
genomic: GCCGGTATGGACATTCTGTGCTCGGACAAGACCGgtgagtgggg ... caccgttcagGCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGT
EST: gi|49470189|gb|BP098050.1|BP098050
EST:     CGCTGTGGAGGAGATGGCCGGTATGGACATTCTGTGCTCGGACAAGACCG                         GCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGT
genomic: CGCTGTGGAGGAGATGGCCGGTATGGACATTCTGTGCTCGGACAAGACCGgtgagtgggg ... caccgttcagGCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGT
EST: gi|49466540|gb|BP094453.1|BP094453
EST:     CGCTGTGGAGGAGATGGCCGGTATGGACATTCTGTGCTCGGACAAGACCG                         GCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGT
genomic: CGCTGTGGAGGAGATGGCCGGTATGGACATTCTGTGCTCGGACAAGACCGgtgagtgggg ... caccgttcagGCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcctgcgcgcgctcacccgcttctcccttgccaacactgccgcaccgttcagGCACCCTTACGCTGAACAAACTGTCGATCGACATGAACACCATCTACAAGTGCGAGCCCGGTATCACCAACGACGACGTGGCCAAGTACGGCGCGCTGTC
            cgctcac  putative branch site (score: 3)