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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctgctggggagttgatgccgtggacgaccagggaaggggcatcgctgtgcggaagaagccgccgaatggcgtgcaagcaggctaggaaccgtgtgaggagcgctcaggcgcgctgttgccgctgttcgcctactgactctactgttttgacagGGGCGTGGAGTGGCTTTCGTCCTGGCGGCTGCGCGACCTGGTCCACTACTCGCCAGAGTCCT

Basic information

species Chlamydomonas reinhardtii
transcript EDP07993
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10787951|gb|AV644623.1|AV644623
EST:     ACGGAGCGCCGGCCGCTGTCGCAGAGCTCGCTCGATATATTCACCGAGCG                         GGGCGTGGAGTGGCTTTCGTCCTGGCGGCTGCGCGACCTGGTCCACTACTC
genomic: ACGGAGCGCCGGCCGCTGTCGCAGAGCTCGCTCGATATATTCACCGAGCGgtgagctgct ... gttttgacagGGGCGTGGAGTGGCTTTCGTCCTGGCGGCTGCGCGACCTGGTCCACTACTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgctcaggcgcgctgttgccgctgttcgcctactgactctactgttttgacagGGGCGTGGAGTGGCTTTCGTCCTGGCGGCTGCGCGACCTGGTCCACTACTCGCCAGAGTCCT
                                tactgac  putative branch site (score: 1)
                                           ctgtttt  putative PPT