1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgagctcggtgcttcctccgtgcacccccttctgtcagcctgtgatatggttgaagtgatggcccccgtccccgtgttccatgccttcccacacgcgcagCTCAAGCTGAACGTGTTGGCATCCTTTGCCGGCAGCGCCCGCGCCAGCGCCAAGTCGGACAAGGCAGATCTGTAGAGCTTGTACTCTTTGGGTTCACTAG
species | Chlamydomonas reinhardtii |
transcript | EDP07728 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCGGCCTGGTGGGCGGCAAGATGAGCGACGACAAGCGCGCGGCCATGCAG CTCAAGCTGAACGTGCTGGCATCCTTTGCCGGCAGCGCCCGCGCCAGCGCCEST: gi|15699150|gb|BI723455.1|BI723455
genomic: GCGGCCTGGTGGGCGGCAAGATGAGTGACGACAAGCGCGCGGCCATGCAGgtgggtgggt ... acacgcgcagCTCAAGCTGAACGTGTTGGCATCCTTTGCCGGCAGCGCCCGCGCCAGCGCC
EST: GCGGCCTGGTGGGCGGCAAGATGAGCGACGACAAGCGCGCGGCCATGCAG CTCAAGCTGAACGTGCTGGCATCCTTTGCCGGCAGCGCCCGCGCCAGCGCC
genomic: GCGGCCTGGTGGGCGGCAAGATGAGTGACGACAAGCGCGCGGCCATGCAGgtgggtgggt ... acacgcgcagCTCAAGCTGAACGTGTTGGCATCCTTTGCCGGCAGCGCCCGCGCCAGCGCC
tatggttgaagtgatggcccccgtccccgtgttccatgccttcccacacgcgcagCTCAAGCTGAACGTGTTGGCATCCTTTGCCGGCAGCGCCCGCGCCAGCGCCAAGTCGGACAAGGCAGATCTGTAGAGCTTGTACTCTTTGGGTTCACTAG
ccttcccac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagctcggtgcttcctccgtgcacccccttctgtcagcctgtgatatggttgaagtgatggcccccgtccccgtgttccatgccttcccacacgcgcagCTCAAGCTGAACGTGTTGGCATCCTTTGCCGGCAGCGCCCGCGCCAGCGCCAAGTCGGACAAGGCAGATCTGTAGAGCTTGTACTCTTTGGGTTCACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - cgtgcac
- - - - - - - - - - - - - - - - - - -gcctgtg
- - - - - - - - - - - - - - - - - - - - - - -tatggtt