1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcaaacggcgccctgcccatcccgttgacactgcatgtcatcacaggcgttctccacatgaacggctacccctttgccccccccctccacacgcctgcagGGCCAAATATGGGAGTCCATCAAGTGGCTCGACGAGACGGGCATGAAGATCATCGAGTCG
species | Chlamydomonas reinhardtii |
transcript | EDP07544 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTGCCACTGGGGCAGCCGCTTCAGCTACACCTTCTACGACAAAAGCCAG GGCCAAATATGGGAGTCCATCAAGTGGCTCGACGAGACGGGCATGAAGATC
genomic: TCTGCCACTGGGGCAGCCGCTTCAGCTACACCTTCTACGACAAAAGCCAGgtggggtggg ... acgcctgcagGGCCAAATATGGGAGTCCATCAAGTGGCTCGACGAGACGGGCATGAAGATC
ggcgttctccacatgaacggctacccctttgccccccccctccacacgcctgcagGGCCAAATATGGGAGTCCATCAAGTGGCTCGACGAGACGGGCATGAAGATCATCGAGTCG
cccctttgcccccccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaacggcgccctgcccatcccgttgacactgcatgtcatcacaggcgttctccacatgaacggctacccctttgccccccccctccacacgcctgcagGGCCAAATATGGGAGTCCATCAAGTGGCTCGACGAGACGGGCATGAAGATCATCGAGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
gcaaacg
- - - - - - - - - - - - - -acactgc
- - - - - - - - - - - - - - - - - - - catcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgaa