1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acgcgacccgtgccttgtcgctacgggttcatgtcacagttcatgttcactggatcgttataccagcgctaagctcgtgcatttccggcattgcttgcagTCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCCCTGGGCATGCCGGGCGCGTCCAGCACCAGCGGCGGCGGCGCGCTGCCGG
species | Chlamydomonas reinhardtii |
transcript | EDP04926 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGCGCTGGCGGACTACCTGGCGGTGGGGACAGACAAGCCCTTCGACATC TCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCCEST: gi|15692731|gb|BI717036.1|BI717036
genomic: AGGCGCTGGCGGACTACCTGGCGGTGGGGACAGACAAGCCCTTCGACATCgtgagtgggg ... ttgcttgcagTCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCC
EST: AGGCGCTGGCGGACTACCTGGCGGTGGGGACAGACAAGCCCTTCGACATC TCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCCEST: gi|16428799|gb|BI994041.1|BI994041
genomic: AGGCGCTGGCGGACTACCTGGCGGTGGGGACAGACAAGCCCTTCGACATCgtgagtgggg ... ttgcttgcagTCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCC
EST: AGGCGCTGGCGGACTACCTGGCGGTGGGGACAGACAAGCCCTTCGACATC TCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCCEST: gi|15692348|gb|BI716653.1|BI716653
genomic: AGGCGCTGGCGGACTACCTGGCGGTGGGGACAGACAAGCCCTTCGACATCgtgagtgggg ... ttgcttgcagTCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCC
EST: AGGCGCTGGCGGACTACCTGGCGGTGGGGACAGACAAGCCCTTCGACATC TCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCC
genomic: AGGCGCTGGCGGACTACCTGGCGGTGGGGACAGACAAGCCCTTCGACATCgtgagtgggg ... ttgcttgcagTCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCC
ttcactggatcgttataccagcgctaagctcgtgcatttccggcattgcttgcagTCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCCCTGGGCATGCCGGGCGCGTCCAGCACCAGCGGCGGCGGCGCGCTGCCGG
ttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgcgacccgtgccttgtcgctacgggttcatgtcacagttcatgttcactggatcgttataccagcgctaagctcgtgcatttccggcattgcttgcagTCGGTGGTCCCCAAGGCGCCGCCCCCGGCTCGTGCGGCTGGCTCAGGCGCCCTGGGCATGCCGGGCGCGTCCAGCACCAGCGGCGGCGGCGCGCTGCCGG
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