1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gatagacgcagctccgcgcatggctgcacgccggcttcatgatcacacctctcatctccctgcctgccctcgcccctgtcacccgctcacgcgctctcagGTGCACTCCGACAAGGACCTGTCCAACGTGGCCAGTGTGTCGGCCGGCGGCAACCCTGACGTGGGCAAGCTGATCAGCGACGCCATGGCCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP03982 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAGGCAGCCTCCAGCCAG GTGCACTCCGACAAGGACCTGTCCAACGTGGCCAGTGTGTCGGCCGGCGGCEST: gi|16072229|gb|BI874225.1|BI874225
genomic: AGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAGGCAGCCTCCAGCCAGgtgcgtgtgt ... gcgctctcagGTGCACTCCGACAAGGACCTGTCCAACGTGGCCAGTGTGTCGGCCGGCGGC
EST: AGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAGGCAGCCTCCAGCCAG GTGCACTCCGACAAGGACCTGTCCAACGTGGCCAGTGTGTCGGCCGGCGGC
genomic: AGAAGACCGTGAACGCGCTGGTGAAGGAGCTGAAGGCAGCCTCCAGCCAGgtgcgtgtgt ... gcgctctcagGTGCACTCCGACAAGGACCTGTCCAACGTGGCCAGTGTGTCGGCCGGCGGC
cacctctcatctccctgcctgccctcgcccctgtcacccgctcacgcgctctcagGTGCACTCCGACAAGGACCTGTCCAACGTGGCCAGTGTGTCGGCCGGCGGCAACCCTGACGTGGGCAAGCTGATCAGCGACGCCATGGCCAAG
cgctcac putative branch site (score: 3)
cgctctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatagacgcagctccgcgcatggctgcacgccggcttcatgatcacacctctcatctccctgcctgccctcgcccctgtcacccgctcacgcgctctcagGTGCACTCCGACAAGGACCTGTCCAACGTGGCCAGTGTGTCGGCCGGCGGCAACCCTGACGTGGGCAAGCTGATCAGCGACGCCATGGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-atagacg
- - - - - - - - - - - - tgcacgc
- - - - - - - - - - - - - - - - - - - - gatcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcaccc