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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggacaagctgcaacagcagagagtgcggatgccggtgaatgcgggtttgagcgtgagcagatgcattcccgtttgcagtgcctgacgcagggaacataaacggtcgtgtatatgcgcgccccctcgccactacagGGATTCTTCAGCGCAAGCGTTGGCCTCTTGATGGCACAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03018
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161819414|gb|FC107241.1|FC107241
EST:     ACCTCGAAGACTTTATTCGCAGCAATGGGAGCCTGTTCGACATCCTGACG                         GGATTCTTCAGCGCAAGCGTTGGCCTGTTGATGGCACAAG
genomic: ACCTCGAAGACTTTATTCGCAGCAATGGGAGCCTGTTCGACATCCTGACGgtgaggacaa ... gccactacagGGATTCTTCAGCGCAAGCGTTGGCCTCTTGATGGCACAAG
EST: gi|23360759|gb|BU648579.1|BU648579
EST:     ACCTCGAAGACTTTATTCGCAGCAATGGGAGCCTGTTCGACATCCTGACG                         GGATTCTTCAGCGCAAGCGTTGGCCTCTTGATGGCACAAG
genomic: ACCTCGAAGACTTTATTCGCAGCAATGGGAGCCTGTTCGACATCCTGACGgtgaggacaa ... gccactacagGGATTCTTCAGCGCAAGCGTTGGCCTCTTGATGGCACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgacgcagggaacataaacggtcgtgtatatgcgcgccccctcgccactacagGGATTCTTCAGCGCAAGCGTTGGCCTCTTGATGGCACAAG
 gcctgac  putative branch site (score: 3)
                                      ccccctcgcc  putative PPT
            aacataaa  TA-rich tract