1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaggaaggagtttgataacgtatcgcattgtgggcggcgggttggggcgcagggaaacagacaaacagtgaaggcggtcccgcgactgactggtgtgcaatgcgcaatccgacccatcccaacagGTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGCGGCCTGCTGGTGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACA
species | Chlamydomonas reinhardtii |
transcript | EDP02266 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAG GTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGCEST: gi|10787383|gb|AV644055.1|AV644055
genomic: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAGgtaggaagga ... atcccaacagGTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGC
EST: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAG GTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGCEST: gi|10790740|gb|AV628106.1|AV628106
genomic: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAGgtaggaagga ... atcccaacagGTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGC
EST: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAG GTCGTCAAGAGCTGGTACATGTTCATGTGCATCAGCACCGGCCTGTGGGGCEST: gi|16432412|gb|BI997638.1|BI997638
genomic: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAGgtaggaagga ... atcccaacagGTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGC
EST: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAG GTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGCEST: gi|49465028|gb|BP092941.1|BP092941
genomic: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAGgtaggaagga ... atcccaacagGTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGC
EST: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAG GTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGC
genomic: TCACCCTGTCGGTGCCCTCGTCCAGCCCCGACAAGCCCTTCGATGAGAAGgtaggaagga ... atcccaacagGTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGC
aaggcggtcccgcgactgactggtgtgcaatgcgcaatccgacccatcccaacagGTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGCGGCCTGCTGGTGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACA
gactgac putative branch site (score: 2)
cccatccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaaggagtttgataacgtatcgcattgtgggcggcgggttggggcgcagggaaacagacaaacagtgaaggcggtcccgcgactgactggtgtgcaatgcgcaatccgacccatcccaacagGTCGTCAAGAGCTGGTACATGTTCGTGTGCATCAGCACCGGCCTGTGGGGCGGCCTGCTGGTGGGCCTGCAGACCGAGTACTTCACCTCCAACCGTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG