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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggcgggcggaggcagggcgggtaaagggaaagcagccacagcagggggggagggctgtcctgacaccacccagtgcaaaaagcactgctgtcataacccagtcacaagaacacgcaaaaacacaaagtgtcgtgaactcgctcacgtgcgcacgcagGTGGCCAGCTGGTGGGACTACGGCTACCAGACGACCGCCATGGCCAACCGCACCGTCATTGTGGACAACAACACCTGGAACACCTCGCACATCGCCACCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP02186
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP02186 (Chlamydomonas reinhardtii), 3'ss of exon 7
lower sequence: GRMZM2G060611_T03 (Zea mays), 3'ss of exon 17
gtgggcgggcggaggcagggcgggtaaagggaaagcagccacagcagggggggagggctgtcctgacaccacccagtgcaaaaagcactgctgtcataacccagt--cacaagaacacgcaaaaacacaaagtgtcgtgaactcgctcacgtgcgcacgcagGTGGCCAGCTGGTGGGACTACGGCTACCAGACGACCGCCATGGCCAACCGCACCGTCATTGTGGACAACAACACCTGGAACACCTCGCACATCGCCACCG
                                                                                        |    |||   |   ||  | |  ||    | |   ||    |   |     | |        ||| |  |||||| ||   |||||||||||| || ||||| || || || ||||||||| | || || ||||| ||||| ||||||||||||| | | || || || || |
---------------------------------------------------------------------------------------gtatgctcaccccttggtttctcttgattgtggactgacttttatacttacacattaaggtgt-tgcac-tgcagGTTGCTTCCTGGTGGGACTATGGTTACCAAACAACTGCAATGGCCAACAGAACTGTGATTGTAGACAATAACACCTGGAACAACACTCATATAGCAACAG

upper sequence: EDP02186 (Chlamydomonas reinhardtii), 3'ss of exon 7
lower sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 17
gtgggcgggcggaggcagggcgggtaaagggaaagcagccacagcagggggggagggctgtcctgacaccacccagtgcaaaaagcactgctgtcataacccagtcacaagaacacgcaaaaacacaaagtgtcgtgaactcgctcacgtgcgcacgcagGTGGCCAGCTGGTGGGACTACGGCTACCAGACGACCGCCATGGCCAACCGCACCGTCATTGTGGACAACAACACCTGGAACACCTCGCACATCGCCACCG
                                            |       ||    | | || || |||      | | |||  | |||||    || |   | | ||    | |   | | |   |    | | || |  ||           | |||||||    ||||||||||| ||||||||||| || |||||||| ||||| || |||||||| || || || |||||||| | | | || || || || |
--------------------------------------------ctccttaagattatttttcttaccccaaatgaagaacaaataaatgctggttaaaacacattataa----atgttgagatattgaca--cataaaatttctt----------gtagGTGGCTTCTTGGTGGGACTATGGCTACCAGACAACTGCCATGGCTAACCGAACTGTCATTGTTGATAATAATACCTGGAATAACACACATATTGCTACTG

upper sequence: EDP02186 (Chlamydomonas reinhardtii), 3'ss of exon 7
lower sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 17
gtgggcgggcggaggcagggcgggtaaagggaaagcagccacagcagggggggagggctgtcctgacaccacccagtgcaaaaagcactgctgtcataacccagtcacaagaacacgcaaaaacacaaagtgtcgtgaactcgctcacgtgcgcacgcagGTGGCCAGCTGGTGGGACTACGGCTACCAGACGACCGCCATGGCCAACCGCACCGTCATTGTGGACAACAACACCTGGAACACCTCGCACATCGCCACCG
                                                     | |  |    |     | || | || | |    |    ||   |     |  ||| |  | | |   | | |   |   || | || |  ||           | |||||||    ||||||||||| || ||||| || || |||||||| ||||| || |||||||| ||||| || |||||||| | | | || || || || |
------------------------------------------------ttcctaagattacatttcttacccctaatgaagagcaaataaatgc--tggttaaaacactattaaatgtcgagatattgatgctcataaaatttctt----------gtagGTGGCATCTTGGTGGGACTATGGATACCAAACAACTGCCATGGCTAACCGAACTGTCATTGTTGACAATAATACCTGGAATAACACACATATTGCTACTG

upper sequence: EDP02186 (Chlamydomonas reinhardtii), 3'ss of exon 7
lower sequence: EFJ15189 (Selaginella moellendorffii), 3'ss of exon 17
gtgggcgggcggaggcagggcgggtaaagggaaagcagccacagcagggggggagggctgtcctgacaccacccagtgcaaaaagcactgctgtcataacccagtcacaagaacacgcaaaaacacaaagtgtcgtgaactcgctcacgtgcgcacgcagGTGGCCAGCTGGTGGGACTACGGCTACCAGACGACCGCCATGGCCAACCGCACCGTCATTGTGGACAACAACACCTGGAACACCTCGCACATCGCCACCG
                                                                                                     | ||     | ||| | |    |      ||      | ||  | |   || |  | |||||||    |||||||| || ||||| || ||||| || ||||| ||| | || |||||||| ||||||||||| |||||||   ||||||| |||||||
---------------------------------------------------------------------------------------------------gtctgtttgtggcacatgtattccc------tgctaaagattcattaa---gcac-tgaagGTGGCGTCGTGGTGGGATTATGGCTATCAAACGACAGCAATGGCAAACAGGACTGTCATTGTAGACAACAACACATGGAACAATACGCACATAGCCACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaagaacacgcaaaaacacaaagtgtcgtgaactcgctcacgtgcgcacgcagGTGGCCAGCTGGTGGGACTACGGCTACCAGACGACCGCCATGGCCAACCGCACCGTCATTGTGGACAACAACACCTGGAACACCTCGCACATCGCCACCG
                                    cgctcac  putative branch site (score: 3)
             aaaaaca  TA-rich tract