1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctcacgtcggcccttagctccggcgccatgcagagacgcacagggccgcaccttcacaaacgcattgcttgtttgtctcttcgctctctgtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG
species | Chlamydomonas reinhardtii |
transcript | EDP01675 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACEST: gi|161819692|gb|FC110730.1|FC110730
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACEST: gi|8513770|gb|BE121665.1|BE121665
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACEST: gi|14235024|gb|BG853840.1|BG853840
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
EST: TCGCGCGTAACGCCATCATCAACGCGGGCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAAACGTGG-CACGCAEST: gi|9210083|gb|BE336998.1|BE336998
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAA-CGTGGGCACGCA
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACEST: gi|10127372|gb|BE726076.1|BE726076
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
EST: TCGCGCGTAACGCCATCATCAACGCGGTCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACEST: gi|15705113|gb|BI729402.1|BI729402
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACEST: gi|9210580|gb|BE337495.1|BE337495
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTAEST: gi|8400964|gb|BE056598.1|BE056598
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTA
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACEST: gi|8933158|gb|BE227919.1|BE227919
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACEST: gi|10125696|gb|BE724400.1|BE724400
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATEST: gi|15373603|gb|BI533029.1|BI533029
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCAT
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTEST: gi|161812247|gb|FC097815.1|FC097815
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATT
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGNGCACGCACEST: gi|161810681|gb|FC096834.1|FC096834
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
EST: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAG ATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
genomic: TCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGACCAGgtgcgtggga ... gtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCAC
gccgcaccttcacaaacgcattgcttgtttgtctcttcgctctctgtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG
tctcttcgctctctgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcacgtcggcccttagctccggcgccatgcagagacgcacagggccgcaccttcacaaacgcattgcttgtttgtctcttcgctctctgtgccaccagATCAAGCAGTCGCTACTGGGCATTGGCATGAAGGACAACGTGGGCACGCACCTGGCGGCGG
gctcacg
- - - - - - - - - - - - - - atgcaga
- - - - - - - - - - - - - - - - - - acgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - accttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacgca