1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtgcgcgcgcgcgcgtgtgcaagcccgcgcgcataccccacccagccatgttgtgtgtgcgcctgatcatctccatcccacatccgccctcggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA
species | Chlamydomonas reinhardtii |
transcript | EDP00871 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCACCAAGGACCTGTTCGACGCCATCGCAGCGG GCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGEST: gi|7687778|gb|AW758424.1|AW758424
genomic: CCACCAAGGACCTGTTCGACGCCATCGCAGCGGgtgcgtgcgt ... cggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACG
EST: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGG GCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGEST: gi|49470113|gb|BP097974.1|BP097974
genomic: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGGgtgcgtgcgt ... cggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACG
EST: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGG GCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGEST: gi|22076228|gb|BQ825004.1|BQ825004
genomic: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGGgtgcgtgcgt ... cggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACG
EST: CCACCAAGGACCTGTTCGACGCCATCGCAGCGG GCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGEST: gi|10780975|gb|AV637655.1|AV637655
genomic: CCACCAAGGACCTGTTCGACGCCATCGCAGCGGgtgcgtgcgt ... cggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACG
EST: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGG GCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGEST: gi|161817937|gb|FC103632.1|FC103632
genomic: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGGgtgcgtgcgt ... cggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACG
EST: AGCCAACCACAGCCACGCCACCAAGGACCTGTACGACGCCATCGCAGCGG GCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGEST: gi|15373362|gb|BI532788.1|BI532788
genomic: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGGgtgcgtgcgt ... cggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACG
EST: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGG GCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGEST: gi|6542126|gb|AV387910.1|AV387910
genomic: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGGgtgcgtgcgt ... cggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACG
EST: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGG GCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACG
genomic: AGCCAACCACAGCCACGCCACCAAGGACCTGTTCGACGCCATCGCAGCGGgtgcgtgcgt ... cggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACG
ccatgttgtgtgtgcgcctgatcatctccatcccacatccgccctcggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA
gcctgat putative branch site (score: 4)
tccgccctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgcgcgcgcgtgtgcaagcccgcgcgcataccccacccagccatgttgtgtgtgcgcctgatcatctccatcccacatccgccctcggccgccagGCGACTACCCGGAGTGGGCGCTCATGGTACAGACCATGGACCCCGCGGACGAGGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - -cgtgtgc
- - - - - - - - - - - - - - -cgcatac
- - - - - - - - - - - - - - - - - - -ccaccca
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatccg