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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgagcaagcatgctggcaggaggcaggaactgagtataggttgctccaaccgttacggcatgtgccatggaccgtgcacctgtgggcaccccgcagctgactgtgtgcgctggcaacacggctctggaatggcggctcacgcgtaagctcacgtgtgccgccgccgctgatgctcctgtgttcgtttgcagGTGGTGAACCGCTACATCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTGCTGTTCATTGATGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP00834
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22058843|gb|BQ813132.1|BQ813132
EST:     AACCCAAGAAACCCGAGATCACAGACAAGCTGCGGCAAGAAAT-AACAAG                         GGTGGTGAACC
genomic: AACCCAAGAAAACCGAGATCACAGACAAGCTGCGGCAAGAAATCAACAAGgtgcgcgagc ... tcgtttgcagG-TGGTGAACC
EST: gi|6547112|gb|AV392896.1|AV392896
EST:     AACCCAAGAAAACCGAGATCACAGACAAGCTGCGGCAAGAAATCAACAAG                         GTGGTGAACCGCTACATCGATC
genomic: AACCCAAGAAAACCGAGATCACAGACAAGCTGCGGCAAGAAATCAACAAGgtgcgcgagc ... tcgtttgcagGTGGTGAACCGCTACATCGATC
EST: gi|10191266|gb|BE761342.1|BE761342
EST:     AACCCAAGAAAACCGAGATCACAGACAAGCTGCGGCAAGAAATCAACAAG                         GTGGTGAACCGCTACATCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTG
genomic: AACCCAAGAAAACCGAGATCACAGACAAGCTGCGGCAAGAAATCAACAAGgtgcgcgagc ... tcgtttgcagGTGGTGAACCGCTACATCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTG
EST: gi|161804509|gb|FC088837.1|FC088837
EST:     AACCCAAGANAACCGAGATCACAGACAAGCTGCGGCAAGAAATCAACAAG                         GTGGTGAACCGCTACATCGACCAGGGTGTGGCGGAGCTGGTGCCGGGTGTG
genomic: AACCCAAGAAAACCGAGATCACAGACAAGCTGCGGCAAGAAATCAACAAGgtgcgcgagc ... tcgtttgcagGTGGTGAACCGCTACATCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTG
EST: gi|22058844|gb|BQ813133.1|BQ813133
EST:     AACCCAAGAAAACCGAGATCACAGACAAGCTGCGGCAAGAAATCAACAAG                         GTGGTGAACCGCTACATCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTG
genomic: AACCCAAGAAAACCGAGATCACAGACAAGCTGCGGCAAGAAATCAACAAGgtgcgcgagc ... tcgtttgcagGTGGTGAACCGCTACATCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacgcgtaagctcacgtgtgccgccgccgctgatgctcctgtgttcgtttgcagGTGGTGAACCGCTACATCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTGCTGTTCATTGATGAG
                                            ttcgttt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgcgagcaagcatgctggcaggaggcaggaactgagtataggttgctccaaccgttacggcatgtgccatggaccgtgcacctgtgggcaccccgcagctgactgtgtgcgctggcaacacggctctggaatggcggctcacgcgtaagctcacgtgtgccgccgccgctgatgctcctgtgttcgtttgcagGTGGTGAACCGCTACATCGATCAGGGTGTGGCGGAGCTGGTGCCGGGTGTGCTGTTCATTGATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT