1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtcgtggcgtggctgactgcccgccacttacgcggcccatctccatggtgatcaactgcttgtttatctctctctgcatgtacgtgcatgctcatgcagGCCTTACGCGGGAGGCGTGGGACCGCGGGCTAGCGGACTTTGCCACCGCGCAGGCCAGCAGGCAGCAGTGATGGCGAGGCGAGGGACGCGTACGCAAGCA
species | Chlamydomonas reinhardtii |
transcript | EDO99981 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGTGCTCGCGACTGGGCATTGTGTGCGTCTACACGCCGCGAG GCCTTACGCGGGAGGCGTGGGACCGCGGGCTAGCGGACTTTGCCACCGCGCEST: gi|16432875|gb|BI998101.1|BI998101
genomic: GAGTGCTCGCGACTGGGCATTGTGTGCGTCTACACGCCGCGAGgtggggtcgg ... gctcatgcagGCCTTACGCGGGAGGCGTGGGACCGCGGGCTAGCGGACTTTGCCACCGCGC
EST: CATTGTGTGCGTCTACACGCCGCGAG GCCTTACGCGGGAGGCGTGGGACCGCGGGCTAGCGGACTTTGCCACCGCGCEST: gi|15704454|gb|BI728759.1|BI728759
genomic: CATTGTGTGCGTCTACACGCCGCGAGgtggggtcgg ... gctcatgcagGCCTTACGCGGGAGGCGTGGGACCGCGGGCTAGCGGACTTTGCCACCGCGC
EST: CTGCACCGAGTGCTCGCGACTGGGCATTGTGTGCGTCTACACGCCGCGAG GCCTTACGCGGGAGGCGTGGGACCGCGGGCTAGCGGACTTTGCCACCGCGC
genomic: CTGCACCGAGTGCTCGCGACTGGGCATTGTGTGCGTCTACACGCCGCGAGgtggggtcgg ... gctcatgcagGCCTTACGCGGGAGGCGTGGGACCGCGGGCTAGCGGACTTTGCCACCGCGC
atggtgatcaactgcttgtttatctctctctgcatgtacgtgcatgctcatgcagGCCTTACGCGGGAGGCGTGGGACCGCGGGCTAGCGGACTTTGCCACCGCGCAGGCCAGCAGGCAGCAGTGATGGCGAGGCGAGGGACGCGTACGCAAGCA
ttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcgtggcgtggctgactgcccgccacttacgcggcccatctccatggtgatcaactgcttgtttatctctctctgcatgtacgtgcatgctcatgcagGCCTTACGCGGGAGGCGTGGGACCGCGGGCTAGCGGACTTTGCCACCGCGCAGGCCAGCAGGCAGCAGTGATGGCGAGGCGAGGGACGCGTACGCAAGCA
- - - - - - - - - - - - ccactta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgtgca