1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcatcttgaacaagccttactagctgtggcgtgtgatcaatacgtggactttggttggtgatggcgttgacctgtcaccgccggttttgctctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCATGAGCGGCCGCGGCGACGCGATCGCGACTGGCTCGTACAACAACCTGT
species | Chlamydomonas reinhardtii |
transcript | EDO98296 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGG TTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCEST: gi|161799655|gb|FC086138.1|FC086138
genomic: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGGgtaagggcgg ... tctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGC
EST: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGG TTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCEST: gi|16430150|gb|BI995376.1|BI995376
genomic: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGGgtaagggcgg ... tctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGC
EST: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGG TTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCEST: gi|34982149|gb|CF556066.1|CF556066
genomic: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGGgtaagggcgg ... tctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGC
EST: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGG TTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCEST: gi|49468556|gb|BP096417.1|BP096417
genomic: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGGgtaagggcgg ... tctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGC
EST: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGG TTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCEST: gi|9461119|gb|BE453574.1|BE453574
genomic: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGGgtaagggcgg ... tctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGC
EST: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGG TTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCEST: gi|161799625|gb|FC087265.1|FC087265
genomic: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGGgtaagggcgg ... tctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGC
EST: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGG TTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCEST: gi|10786541|gb|AV643213.1|AV643213
genomic: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGGgtaagggcgg ... tctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGC
EST: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGG TTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGC
genomic: AGAACGCGCCCGTTGCCACCTACAACGTGCACGAGCACCTGCGCGCGCGGgtaagggcgg ... tctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGC
ggactttggttggtgatggcgttgacctgtcaccgccggttttgctctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCATGAGCGGCCGCGGCGACGCGATCGCGACTGGCTCGTACAACAACCTGT
cgttgac putative branch site (score: 4)
ttttgctctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatcttgaacaagccttactagctgtggcgtgtgatcaatacgtggactttggttggtgatggcgttgacctgtcaccgccggttttgctctcgcgcagTTGTGCGACCTGTATGAGAACGACTCGATCTTCGATAAGTTCGACTGCTGCATGAGCGGCCGCGGCGACGCGATCGCGACTGGCTCGTACAACAACCTGT
- - - - aacaagc
- - - - - - - - - - - - - - gcgtgtg
- - - - - - - - - - - - - - - - - - - -atacgtg
- - - - - - - - - - - - - - - - - - - - - - - - -tttggtt