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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctggcggcaggcattgcacccacctatgcctgacgcaaatgccacctcgctccagcacgctaatgcacggcaatctcaccactgccgcggacacctaaccacgcttacccccagGTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGAT

Basic information

species Chlamydomonas reinhardtii
transcript EDO98063
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161792230|gb|FC079209.1|FC079209
EST:     CGGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACA                         GTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG
genomic: CCGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACAgtaagctggc ... ttacccccagGTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG
EST: gi|9441241|gb|BE441845.1|BE441845
EST:     CGGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACA                         GTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG
genomic: CCGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACAgtaagctggc ... ttacccccagGTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG
EST: gi|161811521|gb|FC098025.1|FC098025
EST:     CGGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACA                         GTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG
genomic: CCGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACAgtaagctggc ... ttacccccagGTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG
EST: gi|10773877|gb|AV624700.1|AV624700
EST:     CCGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACA                         GTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG
genomic: CCGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACAgtaagctggc ... ttacccccagGTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG
EST: gi|23363248|gb|BU651068.1|BU651068
EST:     CCGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACA                         GTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG
genomic: CCGATGACGTACTGCGGCAGGGCGTAAAGGGCATCAGCGAAATTATCACAgtaagctggc ... ttacccccagGTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaatgcacggcaatctcaccactgccgcggacacctaaccacgcttacccccagGTGCCCGGCCTAGTCAACGTGGACTTCGCGGACGTTCGTGCCATCATGGCGGGCGCCGGTAGCTCGCTCATGGGGCAGGGCTATGGAT
                                            cttaccccc  CT-rich tract