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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctgaggggtgggggatgaagggaaggaagcgcagtgtgtgtgtgtgtgtgtgtacatggcgtatgctaacacacgcacattcacacaaccacacgcacacatacacaatcacacacacgttcactctcacacgtccacgcacacactccccatccagGTACAACTGTCAGTTCTTTGGCGGCGAATTTGACTGCCGCGGCAACACCTTCACATGCAGCCTAGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97960
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10774702|gb|AV625525.1|AV625525
EST:     TGCACCTCCACACGCGACACCTGCTACGGCCAGAACTACGCCGACTGCAG                         GTACAACTGTCAGTTCTTTGGCGGCGAATTTGACTGCCGCGGCAACACCTT
genomic: TGCACCTCCACACGCGACACCTGCTACGGCCAGAACTACGCCGACTGCAGgtgctgaggg ... ccccatccagGTACAACTGTCAGTTCTTTGGCGGCGAATTTGACTGCCGCGGCAACACCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacaatcacacacacgttcactctcacacgtccacgcacacactccccatccagGTACAACTGTCAGTTCTTTGGCGGCGAATTTGACTGCCGCGGCAACACCTTCACATGCAGCCTAGCG
                     ctctcac  putative branch site (score: 3)
                                           ctccccatcc  putative PPT