1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caccaccaccagccacccaatgccacgtaacccatggaccaactaactggcgtcaccaacctaccaaccaactaccgtaaccaaccatccccaccgccagGTGGGCTTCGAGCTGGAGGCCACACTCAACCAGGGCGGCGGCGCCGGATTTGATCGCCCCCTGCACGTGCTGCGCAAGCCGCCGCTGCCCCCCACAGCCT
species | Chlamydomonas reinhardtii |
transcript | EDO97942 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
actggcgtcaccaacctaccaaccaactaccgtaaccaaccatccccaccgccagGTGGGCTTCGAGCTGGAGGCCACACTCAACCAGGGCGGCGGCGCCGGATTTGATCGCCCCCTGCACGTGCTGCGCAAGCCGCCGCTGCCCCCCACAGCCT
ccatcccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccaccaccagccacccaatgccacgtaacccatggaccaactaactggcgtcaccaacctaccaaccaactaccgtaaccaaccatccccaccgccagGTGGGCTTCGAGCTGGAGGCCACACTCAACCAGGGCGGCGGCGCCGGATTTGATCGCCCCCTGCACGTGCTGCGCAAGCCGCCGCTGCCCCCCACAGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-accacca
- - - - - - - acccaat
- - - - - - - - - - - ccacgta
- - - - - - - - - - - - - - -acccatg
- - - - - - - - - - - - - - - - - - -accaact
- - - - - - - - - - - - - - - - - - - - - - - - - - tcaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaac