1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acccgtgggccgttgttcattcgcagctgagatgccggtgccctcccttgccacattccacttaccaaccccgcaccggtatccgccgcctccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATCCGGAACAGCGCCGCGGGCGCGTCCGCATGAGCCCAAGCAGCAGGGAATC
species | Chlamydomonas reinhardtii |
transcript | EDO97438 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAG GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATCEST: gi|15692143|gb|BI716448.1|BI716448
genomic: CGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
EST: GGACTTCATTGACAAGCTGCTGCGGTACGACCCCCAG GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATCEST: gi|14242535|gb|BG861351.1|BG861351
genomic: GGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
EST: CACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAG GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATCEST: gi|6541769|gb|AV387553.1|AV387553
genomic: CACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
EST: AGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAG GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATCEST: gi|22070307|gb|BQ819696.1|BQ819696
genomic: AGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
EST: CACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAG GAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
genomic: CACCGGAGGCGCTGGACTTCATTGACAAGCTGCTGCGGTACGACCACCAGgtgagagggg ... tccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATC
ccttgccacattccacttaccaaccccgcaccggtatccgccgcctccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATCCGGAACAGCGCCGCGGGCGCGTCCGCATGAGCCCAAGCAGCAGGGAATC
cacttac putative branch site (score: 2)
ccgcctcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccgtgggccgttgttcattcgcagctgagatgccggtgccctcccttgccacattccacttaccaaccccgcaccggtatccgccgcctccactgcagGAGCGCATCACGTCCAAGGACGCGCTCAACCACCCCTACTTCGACCCCATCCGGAACAGCGCCGCGGGCGCGTCCGCATGAGCCCAAGCAGCAGGGAATC
- - - - - - - - - attcgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgcac