1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gaggtgtaaccggagcgtttccccatgcctccaccactgcctccaccactgcctttactgccatcttcccgcgttccgtcacccgggtctggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCCACTCGGACCACGAG
species | Chlamydomonas reinhardtii |
transcript | EDO96721 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCGCCCTCCTACAACCTGGAAGGGGCTGCCAACCTGGCGCACATGATGG GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCAAGTACCAGACCATCCEST: gi|161798448|gb|FC085724.1|FC085724
genomic: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCAT-C
EST: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGG GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCCEST: gi|16436775|gb|BM001995.1|BM001995
genomic: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
EST: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGG GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCCEST: gi|239841885|gb|GR283742.1|GR283742
genomic: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
EST: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGG GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCCEST: gi|15701461|gb|BI725766.1|BI725766
genomic: CCCGCCCTCCTACAACCTGGACTGGGCTGCCAACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
EST: ACCTGGCGCACATGATGG GCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
genomic: ACCTGGCGCACATGATGGgtgggtgggg ... ggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggtgtaaccggagcgtttccccatgcctccaccactgcctccaccactgcctttactgccatcttcccgcgttccgtcacccgggtctggcgctgcagGCTATGAGGACCCGGGCTGCCTGGAGATGATGCGCATGTACCAGACCATCCACTCGGACCACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-aggtgta
- - - - - - - - - - - -catgcct
- - - - - - - - - - - - - - - ccaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcaccc