1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgggggacaggggcacgagttggggggacgcacggtgtgccctgtggcctcatgtcagtgcggcattgcagcaccaggattatgcagcttgcgcacttggtgaaggacctgcgcccttactgacgatctcgcttctgccatgtctctgtcccgcctgcctgcctctcgtcccctcagGGATACGCTGAGTGTGCGGTGGGATGGAGTGGTGTACGATTGCGACTTCAACCAGCAGCTG
species | Chlamydomonas reinhardtii |
transcript | EDO96585 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTACTGGTGAACAACTTCAACGCCGGGGCGGCGGAGTACCTCATGTGCAG GGATACGCTGAGTGTGCGGTGGGATGGAAGTGGTGTACGATTGCGACTTCAEST: gi|9460002|gb|BE453015.1|BE453015
genomic: CTACTGGTGAACAACTTCAACGCCGGGGCGGCGGAGTACCTCATGTGCAGgtgggggaca ... gtcccctcagGGATACGCTGAGTGTGCGGTGGGATGGA-GTGGTGTACGATTGCGACTTCA
EST: CTACTGGTGAACAACTTCAACGCCGGGGCGGAGGAGTACCTCATGTGCAG GGATACGCTGAGTGTGCGEST: gi|10126760|gb|BE725464.1|BE725464
genomic: CTACTGGTGAACAACTTCAACGCCGGGGCGGCGGAGTACCTCATGTGCAGgtgggggaca ... gtcccctcagGGATACGCTGAGTGTGCG
EST: CTACTGGTGAACAACTTCAACGCCGGGGCGGCGGAGTACCTCATGTGCAG GGATACGCTGAGTGTGCGGTGGGATGGAGTGGTGTACGATTGCGACTTCAAEST: gi|161790197|gb|FC076976.1|FC076976
genomic: CTACTGGTGAACAACTTCAACGCCGGGGCGGCGGAGTACCTCATGTGCAGgtgggggaca ... gtcccctcagGGATACGCTGAGTGTGCGGTGGGATGGAGTGGTGTACGATTGCGACTTCAA
EST: CTACTGGTGAACAACTTCAACGCCGGGGCGGCGGAGTACCTGATGTGCAG GGATACGCTGAGTGTGCGGTGGGATGG
genomic: CTACTGGTGAACAACTTCAACGCCGGGGCGGCGGAGTACCTCATGTGCAGgtgggggaca ... gtcccctcagGGATACGCTGAGTGTGCGGTGGGATGG
acgatctcgcttctgccatgtctctgtcccgcctgcctgcctctcgtcccctcagGGATACGCTGAGTGTGCGGTGGGATGGAGTGGTGTACGATTGCGACTTCAACCAGCAGCTG
tactgac putative branch site (score: 1)
tcccgcctgcctgcct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggggacaggggcacgagttggggggacgcacggtgtgccctgtggcctcatgtcagtgcggcattgcagcaccaggattatgcagcttgcgcacttggtgaaggacctgcgcccttactgacgatctcgcttctgccatgtctctgtcccgcctgcctgcctctcgtcccctcagGGATACGCTGAGTGTGCGGTGGGATGGAGTGGTGTACGATTGCGACTTCAACCAGCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG