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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgtgcttgtgggtcctgccgtgaggtgtctcacgcctgccggctatctaatagtgcttgacggtgtgtgcacctctgccgccccatcttcgtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09808
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161809462|gb|FC096519.1|FC096519
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|10770739|gb|AV621564.1|AV621564
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTCGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161824000|gb|FC107713.1|FC107713
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCATGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161819116|gb|FC108074.1|FC108074
EST:     GAGTTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161821256|gb|FC106483.1|FC106483
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161790010|gb|FC077133.1|FC077133
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161817951|gb|FC100240.1|FC100240
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161791562|gb|FC078938.1|FC078938
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161815810|gb|FC101873.1|FC101873
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161793545|gb|FC078457.1|FC078457
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161790011|gb|FC077134.1|FC077134
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|14225928|gb|BG844744.1|BG844744
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161790271|gb|FC077050.1|FC077050
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|239840663|gb|GR282353.1|GR282353
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161790641|gb|FC079409.1|FC079409
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161806161|gb|FC088942.1|FC088942
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|23361880|gb|BU649716.1|BU649716
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTCGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|14242487|gb|BG861303.1|BG861303
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|15370151|gb|BI529577.1|BI529577
EST:     CTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: CTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161793901|gb|FC079307.1|FC079307
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161802885|gb|FC089914.1|FC089914
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161823344|gb|FC110125.1|FC110125
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161816507|gb|FC105606.1|FC105606
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161790468|gb|FC079171.1|FC079171
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|15369078|gb|BI528504.1|BI528504
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161797243|gb|FC087174.1|FC087174
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161813541|gb|FC100943.1|FC100943
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161806012|gb|FC091484.1|FC091484
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|22058159|gb|BQ812877.1|BQ812877
EST:     GCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161791751|gb|FC078646.1|FC078646
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161819197|gb|FC109884.1|FC109884
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161790571|gb|FC077688.1|FC077688
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|23362441|gb|BU650261.1|BU650261
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161809461|gb|FC096518.1|FC096518
EST:     GCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|239840662|gb|GR282352.1|GR282352
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161806641|gb|FC090098.1|FC090098
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|22073591|gb|BQ822929.1|BQ822929
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161815066|gb|FC104028.1|FC104028
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|10770725|gb|AV621550.1|AV621550
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTCGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161793439|gb|FC077311.1|FC077311
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161807403|gb|FC094564.1|FC094564
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161816643|gb|FC102455.1|FC102455
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|34986849|gb|CF560766.1|CF560766
EST:     GCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161807404|gb|FC094565.1|FC094565
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161819196|gb|FC109883.1|FC109883
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161820598|gb|FC111064.1|FC111064
EST:     AGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCCGAGA-                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACC
genomic: AGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCC-GAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACC
EST: gi|161796978|gb|FC085635.1|FC085635
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|34992099|gb|CF566016.1|CF566016
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161819012|gb|FC108854.1|FC108854
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161811023|gb|FC095278.1|FC095278
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161795097|gb|FC078241.1|FC078241
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161794182|gb|FC080485.1|FC080485
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161821964|gb|FC107620.1|FC107620
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161806671|gb|FC093924.1|FC093924
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161819117|gb|FC108075.1|FC108075
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161797717|gb|FC083735.1|FC083735
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161806642|gb|FC090099.1|FC090099
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161790572|gb|FC077689.1|FC077689
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161806160|gb|FC088941.1|FC088941
EST:     GAGTTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161821965|gb|FC107621.1|FC107621
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161810720|gb|FC098498.1|FC098498
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161816290|gb|FC102126.1|FC102126
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161820090|gb|FC105811.1|FC105811
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|7593179|gb|AW707542.1|AW707542
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161821257|gb|FC106484.1|FC106484
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161820597|gb|FC111063.1|FC111063
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|10775544|gb|AV632224.1|AV632224
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTCGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161816642|gb|FC102454.1|FC102454
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161819011|gb|FC108853.1|FC108853
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161824001|gb|FC107714.1|FC107714
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161793102|gb|FC078092.1|FC078092
EST:     AGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: AGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161815614|gb|FC101807.1|FC101807
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161791797|gb|FC078666.1|FC078666
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161801292|gb|FC088464.1|FC088464
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161816508|gb|FC105607.1|FC105607
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161806013|gb|FC091485.1|FC091485
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161791264|gb|FC081163.1|FC081163
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
EST: gi|161791263|gb|FC081162.1|FC081162
EST:     GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAA                         GGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT
genomic: GAGCTGCAGAAGTCCACAGAGCCGCTCGACCGCAAACTGACCCCCGAGAAgtgagctggg ... gtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaatagtgcttgacggtgtgtgcacctctgccgccccatcttcgtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG
                                        tcttcgt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgtgcttgtgggtcctgccgtgaggtgtctcacgcctgccggctatctaatagtgcttgacggtgtgtgcacctctgccgccccatcttcgtgtgaccagGGCGCAGACGGACGCGCTCAAGCTGTCCAACATGCACGAGGACCTGTTTGTCAAGCTGCACGGCGCGGACCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
-gtgcttg
- - - tgtgggt
- - - - - - - - - - - - - gtctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgc