1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtatgcgaggtaacttcaggtaacatccgtaaaccgtcgctttgctgcatcgcatacactgtctttgcgcaacgttttccttgtgctctttaacacacagGAGCGCTTCACAGGTGTGGCCTTCTCGGAGCAGCAGCTGTACACACACACAG
species | Chlamydomonas reinhardtii |
transcript | EDP09294 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGTCCATGGTTGCAGCACACCAG GAGCGCTTCACCGGTGTGGCCTTCTCGGAGCAGCAGCTGTACACACACACA
genomic: TTCCAGTCCATGGTTGCAGCGCACCAGgtcaggcggc ... taacacacagGAGCGCTTCACAGGTGTGGCCTTCTCGGAGCAGCAGCTGTACACACACACA
tgcatcgcatacactgtctttgcgcaacgttttccttgtgctctttaacacacagGAGCGCTTCACAGGTGTGGCCTTCTCGGAGCAGCAGCTGTACACACACACAG
ctttaac putative branch site (score: 3)
ttttccttgtgctctt CT-rich tract
tctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgaggtaacttcaggtaacatccgtaaaccgtcgctttgctgcatcgcatacactgtctttgcgcaacgttttccttgtgctctttaacacacagGAGCGCTTCACAGGTGTGGCCTTCTCGGAGCAGCAGCTGTACACACACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
gtatgcg
- - - - - - - - - - - acatccg
- - - - - - - - - - - - - - - - - - - - - - - - - -gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttt