Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcaacggatgcggtctggacgcgcaagttatgcctgtacttgcacggggttggccgcaattagagtagacgcacaggtaccaagcgacaagccctaggcaggctcattggcacgcttccagctcacggtctgacgtctcccgtatcttgccacctccgcccgcgccgcgcagAGGGCTGCCCCACCCTGACCAACATGCTGGTGATCCTGGTCGGTGGTATCCCCATTGCCATGCCCACCGTGCTGTCCGTCACCCTGGCTCTGGGCGCTGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP08073
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49470189|gb|BP098050.1|BP098050
EST:     GCTGGCCGTGCAGTTCGGCCACTACGGCCACGGCTGCACTTCCGGCGAGG                         AGGGCTGCCCCACCCTGACCAACATGCTGGTGATCCTGGTCGGTGGTATCC
genomic: GCTGGCCGTGCAGTTCGGCCACTACGGCCACGGCTGCACTTCCGGCGAGGgtgagtgcaa ... cgccgcgcagAGGGCTGCCCCACCCTGACCAACATGCTGGTGATCCTGGTCGGTGGTATCC
EST: gi|49468748|gb|BP096609.1|BP096609
EST:     GCTGGCCGTGCAGTTCGGCCACTACGGCCACGGCTGCACTTCCGGCGAGG                         AGGGCTGCCCCACCCTGATCAACATGCTGGTGATCCTGGTCGGTGGTATCC
genomic: GCTGGCCGTGCAGTTCGGCCACTACGGCCACGGCTGCACTTCCGGCGAGGgtgagtgcaa ... cgccgcgcagAGGGCTGCCCCACCCTGACCAACATGCTGGTGATCCTGGTCGGTGGTATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagctcacggtctgacgtctcccgtatcttgccacctccgcccgcgccgcgcagAGGGCTGCCCCACCCTGACCAACATGCTGGTGATCCTGGTCGGTGGTATCCCCATTGCCATGCCCACCGTGCTGTCCGTCACCCTGGCTCTGGGCGCTGC
          gtctgac  putative branch site (score: 3)