1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcgcgctgcgaagcgccttcactgcagcaagcgcctctggcacggtgtaatgaatcgagttttgagtttggaaaacccctgcatttctgcggaactgcagACCATGCACAACATCCAGACGGAGGTCTTCGACCAGCACCCGCTGTCCAACCCCGTCCTGGCGGCGGCGCGCAAGATGGCTACCGGCATGGTGGTGGGCA
species | Chlamydomonas reinhardtii |
transcript | EDP07984 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGGCCCACGCTGTGGCGTGTGACCACTTGGAACACACTTTACTACGGG ACCATGCACAACATCCAGACGGAGGTCTTCGACCAGCACCCGCTGTCCAACEST: gi|23363648|gb|BU651468.1|BU651468
genomic: TTGGGCCCACGCTGTGGCGTGTGACCACTTGGAACACACTTTACTACGGGgtagggaaca ... ggaactgcagACCATGCACAACATCCAGACGGAGGTCTTCGACCAGCACCCGCTGTCCAAC
EST: TTGGGCCCACGCTGTGGCGTGTGACCACTTGGAACACACTTTACTACGGG ACCATGCACAACATCCAGACGGAGGTCTTCGACCAGCACCCGCTGTCCAAC
genomic: TTGGGCCCACGCTGTGGCGTGTGACCACTTGGAACACACTTTACTACGGGgtagggaaca ... ggaactgcagACCATGCACAACATCCAGACGGAGGTCTTCGACCAGCACCCGCTGTCCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgcgctgcgaagcgccttcactgcagcaagcgcctctggcacggtgtaatgaatcgagttttgagtttggaaaacccctgcatttctgcggaactgcagACCATGCACAACATCCAGACGGAGGTCTTCGACCAGCACCCGCTGTCCAACCCCGTCCTGGCGGCGGCGCGCAAGATGGCTACCGGCATGGTGGTGGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - - - -ggtgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagttt