1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctcctgctgcacgcacgcaatcactcacgcactcacgcgctcactaaacacacgcgcgcacgcattcactcacgcacgggctcgcctgccgcccccgcagCACTACAACCTGGTGGACGAGAAGGAGCTGGCGCCGCTGCAGGAGCTGATAGACCAGTTCCTGGGGAGAGCGGGATCAGCCAGCGCCGCGGGCACGCAGT
species | Chlamydomonas reinhardtii |
transcript | EDP07654 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGCTCACCTCAACACCTGCTTCAAGCACTTCATCTTCTTTGTCACG CACTACAACCTGGTGGACGAGAAGGAGCTGGCGCCGCTGCAAGAGCTGATAEST: gi|16072035|gb|BI874015.1|BI874015
genomic: AGGAGGCTCACCTCAACACCTGCTTCAAGCACTTCATCTTCTTTGTCACGgtgagggcac ... gcccccgcagCACTACAACCTGGTGGACGAGAAGGAGCTGGCGCCGCTGCAGGAGCTGATA
EST: AGGAGGCTCACCTCAACACCTGCTTCAAGCACTTCATCTTCTTTGTCACG CACTACAACCTGGTGGACGAGAAGGAGCTGGCGCCGCTGCAGGAGCTGATAEST: gi|9028072|gb|BE238112.1|BE238112
genomic: AGGAGGCTCACCTCAACACCTGCTTCAAGCACTTCATCTTCTTTGTCACGgtgagggcac ... gcccccgcagCACTACAACCTGGTGGACGAGAAGGAGCTGGCGCCGCTGCAGGAGCTGATA
EST: AGGAGGCTCACCTCAACACCTGCTTCAAGCACTTCATCTTCTTTGTCACG CACTACAACCTGGTGGACGAGAAGGAGCTGGCGCCGCTGCAGGAGCTGATA
genomic: AGGAGGCTCACCTCAACACCTGCTTCAAGCACTTCATCTTCTTTGTCACGgtgagggcac ... gcccccgcagCACTACAACCTGGTGGACGAGAAGGAGCTGGCGCCGCTGCAGGAGCTGATA
aaacacacgcgcgcacgcattcactcacgcacgggctcgcctgccgcccccgcagCACTACAACCTGGTGGACGAGAAGGAGCTGGCGCCGCTGCAGGAGCTGATAGACCAGTTCCTGGGGAGAGCGGGATCAGCCAGCGCCGCGGGCACGCAGT
cactcac putative branch site (score: 2)
ccgccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctgctgcacgcacgcaatcactcacgcactcacgcgctcactaaacacacgcgcgcacgcattcactcacgcacgggctcgcctgccgcccccgcagCACTACAACCTGGTGGACGAGAAGGAGCTGGCGCCGCTGCAGGAGCTGATAGACCAGTTCCTGGGGAGAGCGGGATCAGCCAGCGCCGCGGGCACGCAGT
- - - - gcacgca
- - - - -cacgcac
- - - - - acgcacg
- - - - - - - - - aatcact
- - - - - - - - - - - - - - - - -cacgcgc
- - - - - - - - - - - - - - - - - - - - tcactaa
- - - - - - - - - - - - - - - - - - - - - - - -acacacg