1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccagcgtcaaggggagcaagcagttgacagtggcagcacctgaggcgcgttcagccgtgaatgctctggcccgccgtttcttgctgtcttcttcctgcagGCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCGTTCCTCACACTCCGCAAGATCGAG
species | Chlamydomonas reinhardtii |
transcript | EDP06728 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGCGCTGCAGGAGAAGCAGAGCGCGATCGTGCGCGCGCAGGGTGAG GCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCTTTCEST: gi|161821633|gb|FC108134.1|FC108134
genomic: ACAAGGCGCTGCAGGAGAAGCAGAGCGCGATCGTGCGCGCGCAGGGTGAGgtaagcagac ... cttcctgcagGCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCGTTC
EST: ACAAGGCGCTGCAGGAGAAGCAGAGCGCGATCGTGCGCGCGCAGGGTGAG GCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCTTTCEST: gi|22074365|gb|BQ823420.1|BQ823420
genomic: ACAAGGCGCTGCAGGAGAAGCAGAGCGCGATCGTGCGCGCGCAGGGTGAGgtaagcagac ... cttcctgcagGCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCGTTC
EST: ACAAGGCGCTGCAGGAGAAGCAGAGCGCGATCGTGCGCGCGCAGGGTGAG GCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCGTTCEST: gi|161801894|gb|FC090730.1|FC090730
genomic: ACAAGGCGCTGCAGGAGAAGCAGAGCGCGATCGTGCGCGCGCAGGGTGAGgtaagcagac ... cttcctgcagGCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCGTTC
EST: ACAAGGCGCTGCAGGAGAAGCAGAGCGCGATCGTGCGCGCGCAGGGTGAG GCGCAATCGGCGAAGCTGATCGGTGAGGCGGT
genomic: ACAAGGCGCTGCAGGAGAAGCAGAGCGCGATCGTGCGCGCGCAGGGTGAGgtaagcagac ... cttcctgcagGCGCAATCGGCGAAGCTGATCGGTGAGGCGGT
cgcgttcagccgtgaatgctctggcccgccgtttcttgctgtcttcttcctgcagGCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCGTTCCTCACACTCCGCAAGATCGAG
cccgccgtttcttgct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccagcgtcaaggggagcaagcagttgacagtggcagcacctgaggcgcgttcagccgtgaatgctctggcccgccgtttcttgctgtcttcttcctgcagGCGCAATCGGCGAAGCTGATCGGTGAGGCGGTGAAGCAGAACCCGGCGTTCCTCACACTCCGCAAGATCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaatg