1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgcctcacacgccactccaaaggcccgccacgaacctcgccacaaacccgcgcccgcccgacccccaagctaaccagcacaaacacgcgcgtgtccgcagGGCGTCATCCTGTACGGCGAGCCCGGCACCGGCAAGACGCTGCTGGCCAAGGCGGTGGCCAACTCCACCTCCGCCACCTTCCTGCGCGTGGTGGGCAGCG
species | Chlamydomonas reinhardtii |
transcript | EDP05705 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCTCACACATCCCGAGCTGTACGAGGACATCGGGATAAAGCCGCCCAAG GGCGTCATCCTGTACGGCGAGCCCGGCACCGGCAAGACGCTGCTGGCCAAGEST: gi|10769566|gb|AV620391.1|AV620391
genomic: CGCTCACACATCCCGAGCTGTACGAGGACATCGGGATAAAGCCGCCCAAGgtgcaggcgg ... gtgtccgcagGGCGTCATCCTGTACGGCGAGCCCGGCACCGGCAAGACGCTGCTGGCCAAG
EST: ACATCCCGAGCTGTACGAGGACATCGGGATAAAGCCGCCCAAG GGCGTCATCCTGTACGGCGAGCCCGGCACCGGCAAGACGCTGCTGGCCAAG
genomic: ACATCCCGAGCTGTACGAGGACATCGGGATAAAGCCGCCCAAGgtgcaggcgg ... gtgtccgcagGGCGTCATCCTGTACGGCGAGCCCGGCACCGGCAAGACGCTGCTGGCCAAG
acccgcgcccgcccgacccccaagctaaccagcacaaacacgcgcgtgtccgcagGGCGTCATCCTGTACGGCGAGCCCGGCACCGGCAAGACGCTGCTGGCCAAGGCGGTGGCCAACTCCACCTCCGCCACCTTCCTGCGCGTGGTGGGCAGCG
agctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctcacacgccactccaaaggcccgccacgaacctcgccacaaacccgcgcccgcccgacccccaagctaaccagcacaaacacgcgcgtgtccgcagGGCGTCATCCTGTACGGCGAGCCCGGCACCGGCAAGACGCTGCTGGCCAAGGCGGTGGCCAACTCCACCTCCGCCACCTTCCTGCGCGTGGTGGGCAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - -cacacgc
- - - - - - -actccaa
- - - - - - - - - - - - - - cacgaac
- - - - - - - - - - - - - - - - - - - -ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaca