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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcgtgggcggtacagctaattcgtacggacttggggcagggctacagccagtggttctctgggcggtggttgggtatcgttgtgtagcgcccctggctttactgacatttcccgaatccatgtgtggccctgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGGCCTCGTCTCAGTCGTAACCGCAGCAAATAAAGGACAGCTTGCCTCGTGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP05606
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22073288|gb|BQ822626.1|BQ822626
EST:     GGACGCCCTGCATGCGATGCTGCAG                         GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
genomic: GGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
EST: gi|9460034|gb|BE453030.1|BE453030
EST:     GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAG                         GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
genomic: GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
EST: gi|10769232|gb|AV620057.1|AV620057
EST:     GAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAG                         GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
genomic: GAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
EST: gi|14227480|gb|BG846296.1|BG846296
EST:     GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAG                         GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
genomic: GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
EST: gi|15373471|gb|BI532897.1|BI532897
EST:     GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAG                         GCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG
genomic: GCGTCCACAAAGAGAGCATGGACGCGGACGCCCTGCATGCGATGCTGCAGgtatgtgcgt ... tgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgcccctggctttactgacatttcccgaatccatgtgtggccctgtgatgcagGCGGAGGTGAAGGCGGAAGAGGAGGAGCGCACCTTCGGCTTCGGGTCACGGCCTCGTCTCAGTCGTAACCGCAGCAAATAAAGGACAGCTTGCCTCGTGA
              tactgac  putative branch site (score: 1)