Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggcgagcggcacatgcattacggcactgcgcctccaccacattcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01658
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: LOC_Os11g29190.5 (Oryza sativa), 3'ss of exon 2
gggcgagcggcacatgcattacggcactgcgcctccaccacattcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG-----------------------------------------
                                   |      |||      |    | ||||||  | |   |  | | |   || ||||   |  ||||| ||||||||||||||||| ||||||||||| || |||||||||||||| | |  |   | |    |    ||      || ||    |       ||||                                         
-----------------------------------ctttttgttcggatgat-accaggttattgacac---atctgtgatctaattgtgtttc--agctatgccatcaagaagaaggatgagatcgagcgtgttgccaagGCCAACCGTTGAGTGGTGATCCCATGTCATTGTGCTAAAGCTCTTGCGCTGTTTGGCAGGACTATACTTTTTGCTAGTAATTTAAGCCTTTTCAGACCTA

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 3'ss of exon 3
gggcgagcggcacatgcattacggcactgcgcctccaccacattcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG
    |  |  |||||   | | || ||  |   | |      |||      |    | ||||||  | |   |  | | |   || ||||   |  ||||| ||||||||||||||||| ||||||||||| || |||||||||||||| | |  |   | |    |    ||      || ||    |       ||  
----gtacaacacat-tgtcatggtacatc--ttgctttttgttcggatgat-accaggttattgacac---atctgtgatctaattgtgtttc--agCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCGTTGAGTGGTGATCCCATGTCATTGTGCTAAAGCTCTTGCGCTGTTTGGC--

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 3'ss of exon 3
gggcgagcggcacatgcattacggcactgcgcctccaccacattcaagcacttgtgaagttatt--cgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG
                               | | |  | ||||  |  |    ||| | || |  | |  |     | | |  |  || ||   |  ||||| ||||||||||||||||| ||||| ||||| || |||||||| ||||| | |  |   | |         ||     ||| |           | |   
-------------------------gtaaatcttgcttctcatttgatgaa--atgaggctactgacacatccatgctctaattctgatatgttac--agCTATGCCATCAAGAAGAAGGATGAGATTGAGCGTGTTGCCAAGGCGAACCGTTGAGTGCTGAACCCATCTCAGTGTGCTCGAGCTATTGCCTTGCACTGT--

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: GRMZM2G078985_T01 (Zea mays), 3'ss of exon 3
gggcgagcggcacatgcattacggc--actgcgcctccaccacattcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCA-GCAGCAG
         | | ||  ||   | |   ||     |        ||     |  || || || | | |  |       ||||    |||      | |||||||||||||||||||||||||||||| ||||| || |||||||||||||| | |  |   |||      | |||  ||    |    || |  | |   | |
---------gtatatatatcctgtctggctatatttggttgtttttttcctatctgcgatgtgaattgtgctca----ttcatggcaattcttgtcacagCTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCGTTGAGTGG--AGCT-TGTATCCTGGTGCACTTGCACTAGAACTACGTTTCTG

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: GRMZM2G156673_T03 (Zea mays), 3'ss of exon 2
gggcgagcggcacatgcattacggcactgcgcctccaccacattcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG---
         | ||||   || |     |||  ||   | |  |   |   |    || || |     | || |   |||   | |||        ||| |||||||||||||||||||||||||| ||||| || |||||||||||||| | ||        |||  ||      | | |    ||    | | |        
---------gtacatatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgttctca---ttcgtgccaattcttgttacagTTACGCCATCAAGAAGAAGGACGAGATTGAGCGTGTTGCCAAGGCCAACCGTTGAACTG-----AGCTTGTATCCTGGTGCACTCTGCGCTGGAAACTTTTATGT

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: Vv04s0043g00440.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------gggcgagcggcacat-gcattacggcactgcgcctccaccacattcaagcacttgt---gaagttattcgctcctgact-----tttcacac-aaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAG-GTCGCAGGAGCAGCAGCAG
                           ||     | || ||| |    | ||  |  |  |     |||     | | |   |   ||||    |  || ||     | | | |  | ||||    | |||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||| | |    | || |||       ||    ||| ||       ||| | |   
gtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCGTTGAGATTGGAGGAGCTT-CATGGCAAGAGAGAGTTTTGATTGCAACTGT--

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: PP1S114_143V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------gggcgagcggcacatgcattacggcactgcgcctccaccacattcaagcacttgtgaagttattcgctcctgactt--ttcacacaa----atgtgccgcg-cagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCA-GGTG-CTGCCGCGG-AGGTCGCAGGAGCAGCAGCAG
                                                || | |       ||   |   | |  | |  |  |     |    | | | |  |||  ||  | |  |||     || ||| |      |  |  | | |||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||   || | ||| | ||||  |||  ||  |  |       | |       
gtaggaggtgttgggattggggcgaggtgtgtgaggggtgggatgcatggagggaattgagtgatatggtggatagtgaatggattttgtggtggaa-tggaaaagaaatgggatgttgaggggattgacatagcgtggttggttgtgacagCTACGCCATCAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAAGCCAATCGTTAAGCTAGTATCAGGATGGTGGTTGCTTCGATAAATTCTCTCCGAATT-----

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: PP1S400_33V6.1 (Physcomitrella patens), 3'ss of exon 3
gggcgagcggc-acatgca---ttacggcactgcgcctccaccacattcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCA-GGTGCT--GCCGCGGAGGTCGCAGGAGCAGCAGCAG
|   ||   |  ||  | |    | || || |   | |   |        || | |||| |   ||  |  |       ||      || | |      ||||||||| || ||||||||||||||||||||||| ||||||||||| || || |||   ||   ||  | ||| ||  |   | |  |||     |          
gtatgaatagttacgggaaagtcttcgacatt-tacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacagCTACGCTATAAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAGGCTAATCGTTAAGCTAGTTTCACGATGGTTCTTGGATTCAGGAGTCCTTTAAAGTTT-----

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: PP1S10_385V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------gggcgagcggcacatgcattacggcac-tgcgcctccaccacattcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGT--GCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG
           | |  | |      |    |     || |  | |  ||     ||     || ||| |   |  ||    ||||  |   |      ||       |||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||   ||  |||  | ||    |||  | | |  | |   |   |      
gtaaaatgcttgagacaaccttgttttgtctgaattacatatggcgtcattctgttttgatacctgttacacttctctggactga--taaaaggttgttgcttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGTTAAGCTAGTTGCAAGATGTTTATTGCATCTGGGAACTCTTTAAATGTT----

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: PP1S114_146V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------gggcgagcggcacatgcattacggcactgcgcctccaccacattcaagcacttgtgaagttattcgctcctgactt--ttcacacaa----atgtgccgcg-cagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG
                                                || | |       ||   |   | |  | |  |  |     |    | | | |  |||  ||  | |  |||     || ||| |      |  |  | | |||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||   || | ||| | | |  |  ||  |        | |   ||  | 
gtaggaggtgttgggattggggcgaggtgtgtgaggggtgggatgcatggagggaattgagtgatatggtggatagtgaatggattttgtggtggaa-tggaaaagaaatgggatgttgaggggattgacatagcgtggttggttgtgacagCTACGCCATCAAGAAGAAGGACGAGATCGAGCGTGTGGCCAAAGCCAATCGTTAAGCTAGTATCAGGATG-GTGGTTGCTTATAAAAGTAGTGTTTCATTA-

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: PP1S101_208V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------------gggcgagcggcacat-----gcattacggcactgcgcctccaccacattcaagcacttgtgaagttattcgctcctgacttt-tcacacaaat-------gtgccgc--------gcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG
                         | ||| | ||  |||     |  ||     | |  |     ||    ||   |    ||| |  | ||||  |  ||||||| ||||  |          ||   |          ||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| |||   ||     | | | | |   |   |    |   |      |  | 
gtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacagCTACGCGATCAAAAAGAAGGATGAGATCGAGCGTGTGGCTAAGGCCAACCGTTAAGCTAGTTTTGGGATG-GTTATTGTACACAAAGATTGTTTTTTAATA-

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: EFJ18003 (Selaginella moellendorffii), 3'ss of exon 4
gggcgagcggcacatgcattacggcactgcgcctccaccac-attcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG
                            |  | |||  ||   ||| ||| | ||    |  |    ||     |   |        |||      |||||| || ||||| ||||||||||||||||| || || |||||||| || || | |                                               
----------------------------gtacttcctacattgttctagctcatgctttgaaagaaactaagagccccttctgtgcttgtttgcatcagCTATGCGATCAAAAAGAAGGACGAGATCGAACGTGTTGCCAAGGCAAATCGTTGA-----------------------------------------------

upper sequence: EDP01658 (Chlamydomonas reinhardtii), 3'ss of exon 6
lower sequence: EFJ37091 (Selaginella moellendorffii), 3'ss of exon 4
gggcgagcggcacatgcattacggcactgcgcctccaccac-attcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAG--GTCGCAGGAGCAGCAGCAG-
                            |  | |||  ||   ||| ||| | ||    |  |    ||     ||  |        |||      |||||| || ||||| ||||||||||||||||| || || |||||||| || || | |||       |     | |  || | |     | |      |  |    | 
----------------------------gtacttcctacattgttctagctcatgctttgaaagaaactaagagctccttctgtgcttgtttgcatcagCTATGCGATCAAAAAGAAGGACGAGATCGAACGTGTTGCCAAGGCAAATCGTTGAAGAG-----AATTTTTTCCACCACAGGTTTATTGTTTTCACTTCGCTTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15372060|gb|BI531486.1|BI531486
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|34990620|gb|CF564537.1|CF564537
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|6544623|gb|AV390407.1|AV390407
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAAGGCTCGTCCATCAGCT                         ACGCCATCAAGAAGAAG-ACGAGATCGA-CGCGTGGC
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGC
EST: gi|7545796|gb|AW676284.1|AW676284
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|49459862|gb|BP087775.1|BP087775
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGC
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGC
EST: gi|22070734|gb|BQ820072.1|BQ820072
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|22076848|gb|BQ825624.1|BQ825624
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|34990246|gb|CF564163.1|CF564163
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|34985639|gb|CF559556.1|CF559556
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAGGGACGAGATCGAGCGCGTGGCCAAGGCCCACCCGC
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACC-GC
EST: gi|22074894|gb|BQ823670.1|BQ823670
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|15701424|gb|BI725729.1|BI725729
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAG
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAG
EST: gi|14237243|gb|BG856059.1|BG856059
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|22050075|gb|BQ809058.1|BQ809058
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|6552159|gb|AV397943.1|AV397943
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAA
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAA
EST: gi|22076703|gb|BQ825479.1|BQ825479
EST:     GTGCCTGGCTGACGAGCTGNTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCG
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCG
EST: gi|49469184|gb|BP097045.1|BP097045
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGT
EST: gi|15367825|gb|BI527251.1|BI527251
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|14242403|gb|BG861219.1|BG861219
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
EST: gi|22074623|gb|BQ823546.1|BQ823546
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTNCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAG
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAG
EST: gi|7593508|gb|AW707759.1|AW707759
EST:     GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGCT                         ACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT
genomic: GTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgc ... ccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG
                      tcctgac  putative branch site (score: 2)
           aagttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gggcgagcggcacatgcattacggcactgcgcctccaccacattcaagcacttgtgaagttattcgctcctgacttttcacacaaatgtgccgcgcagctACGCCATCAAGAAGAAGGACGAGATCGAGCGCGTGGCCAAGGCCAACCGCTAAAGGAGCAGCAGCAGGTGCTGCCGCGGAGGTCGCAGGAGCAGCAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
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- - - - - - - - - - - - - - - - - - - -acattca
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