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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccccccccctccttgactattgggacctgtttcattgggctcgggcacatacccccccccccccacacacacacacacacaccacccccgcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGCCGGGCTTTGGCGTGCACACCATGAAGCTGATCAACAAGGCCGGCCGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP00871
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49462392|gb|BP090305.1|BP090305
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: gi|7687778|gb|AW758424.1|AW758424
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: gi|8286610|gb|BE024169.1|BE024169
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: gi|15697484|gb|BI721789.1|BI721789
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACCTTCCTGCT
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCT
EST: gi|23361192|gb|BU649012.1|BU649012
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: gi|161817937|gb|FC103632.1|FC103632
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: gi|6547218|gb|AV393002.1|AV393002
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: gi|22064859|gb|BQ816064.1|BQ816064
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: gi|15373362|gb|BI532788.1|BI532788
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
EST: gi|6542126|gb|AV387910.1|AV387910
EST:     CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATG                         CTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG
genomic: CCTGGCGCATTATGGACTTCCTGTCGCACCACCCCGAGTCATGCCACATGgtgcgtagtg ... gcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacatacccccccccccccacacacacacacacacaccacccccgcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGCCGGGCTTTGGCGTGCACACCATGAAGCTGATCAACAAGGCCGGCCGCG
                                     ccacccccgcccct  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gccccccccctccttgactattgggacctgtttcattgggctcgggcacatacccccccccccccacacacacacacacacaccacccccgcccctgcagCTGACGTTCCTGCTGGACGACGCCGGCATCCCGCTCAACTACCGCCACATGCCGGGCTTTGGCGTGCACACCATGAAGCTGATCAACAAGGCCGGCCGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - -ttgggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccccc